Hb_114893_040

Information

Type transcription factor
Description TF Family: mTERF
Location Contig114893: 39848-43465
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10070g
description hypothetical protein
nr
ID KDP46315.1
description hypothetical protein JCGZ_10155 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10155 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04498: 41735-42210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114893_040 0.0 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
2 Hb_002835_160 0.1033018811 - - Kinase superfamily protein [Theobroma cacao]
3 Hb_003025_140 0.1153102854 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000085_070 0.1185806528 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
5 Hb_189003_060 0.1200567655 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_011861_050 0.1233280208 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
7 Hb_000480_040 0.1244181172 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
8 Hb_000878_030 0.1254300768 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_010344_020 0.1308761866 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
10 Hb_006905_030 0.131446721 - - -
11 Hb_000265_070 0.1322020236 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
12 Hb_006846_070 0.1331523765 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
13 Hb_000676_060 0.1352637808 - - Sec14 cytosolic factor, putative [Ricinus communis]
14 Hb_001009_260 0.1371148363 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
15 Hb_004710_020 0.1375260245 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_000108_020 0.1387911072 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
17 Hb_163145_030 0.1395018714 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
18 Hb_000537_070 0.140654208 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
19 Hb_001723_030 0.1411511058 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
20 Hb_000309_020 0.1417213212 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]

Gene co-expression network

sample Hb_114893_040 Hb_114893_040 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_003025_140 Hb_003025_140 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_189003_060 Hb_189003_060 Hb_114893_040--Hb_189003_060 Hb_011861_050 Hb_011861_050 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040 Hb_000194_010 Hb_000194_010 Hb_002835_160--Hb_000194_010 Hb_029695_070 Hb_029695_070 Hb_002835_160--Hb_029695_070 Hb_002044_020 Hb_002044_020 Hb_002835_160--Hb_002044_020 Hb_000061_150 Hb_000061_150 Hb_002835_160--Hb_000061_150 Hb_002835_160--Hb_189003_060 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_000108_020 Hb_000108_020 Hb_000085_070--Hb_000108_020 Hb_000309_020 Hb_000309_020 Hb_000085_070--Hb_000309_020 Hb_000085_070--Hb_000480_040 Hb_002542_160 Hb_002542_160 Hb_000085_070--Hb_002542_160 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000220_210 Hb_000220_210 Hb_000085_070--Hb_000220_210 Hb_000473_050 Hb_000473_050 Hb_189003_060--Hb_000473_050 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_001959_060 Hb_001959_060 Hb_189003_060--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_189003_060--Hb_000684_430 Hb_189003_060--Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_011861_050--Hb_005147_080 Hb_000480_040--Hb_000309_020 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000480_040--Hb_000108_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78324 0.706375 3.67893 2.19971 0.726492 1.51807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545072 0.671277 1.30672 1.76635 5.9032

CAGE analysis