Hb_000878_030

Information

Type -
Description -
Location Contig878: 50908-54447
Sequence    

Annotation

kegg
ID rcu:RCOM_0422070
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002524091.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q38871
description Calcium-dependent protein kinase 5 OS=Arabidopsis thaliana GN=CPK5 PE=2 SV=1
trembl
ID B9SDM2
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0422070 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61295: 53659-54363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_030 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_001220_050 0.1134013973 - - DNA-damage-inducible protein f, putative [Ricinus communis]
3 Hb_001009_260 0.116816183 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
4 Hb_009020_040 0.1192312079 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
5 Hb_000331_490 0.1194016466 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
6 Hb_004735_020 0.1206568289 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
7 Hb_114893_040 0.1254300768 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
8 Hb_005250_010 0.1282217962 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
9 Hb_000114_150 0.1316971697 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_000816_200 0.1338973381 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
11 Hb_011861_050 0.1344288715 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
12 Hb_001195_770 0.1345260936 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_001080_070 0.1346107611 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
14 Hb_003025_140 0.1355991287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000172_380 0.1356044475 - - small heat-shock protein, putative [Ricinus communis]
16 Hb_016461_030 0.135909663 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_003475_020 0.1360038262 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
18 Hb_000345_370 0.1378423541 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
19 Hb_003878_080 0.1379647082 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
20 Hb_000684_280 0.1387967277 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000878_030 Hb_000878_030 Hb_001220_050 Hb_001220_050 Hb_000878_030--Hb_001220_050 Hb_001009_260 Hb_001009_260 Hb_000878_030--Hb_001009_260 Hb_009020_040 Hb_009020_040 Hb_000878_030--Hb_009020_040 Hb_000331_490 Hb_000331_490 Hb_000878_030--Hb_000331_490 Hb_004735_020 Hb_004735_020 Hb_000878_030--Hb_004735_020 Hb_114893_040 Hb_114893_040 Hb_000878_030--Hb_114893_040 Hb_000345_370 Hb_000345_370 Hb_001220_050--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_001220_050--Hb_007769_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001723_030 Hb_001723_030 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_002232_390 Hb_002232_390 Hb_009020_040--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_009020_040--Hb_003475_020 Hb_000331_490--Hb_002232_390 Hb_000331_490--Hb_003475_020 Hb_000331_490--Hb_009020_040 Hb_000368_090 Hb_000368_090 Hb_000331_490--Hb_000368_090 Hb_000230_290 Hb_000230_290 Hb_000331_490--Hb_000230_290 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_010344_030 Hb_010344_030 Hb_004735_020--Hb_010344_030 Hb_004735_020--Hb_130589_010 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_003025_140 Hb_003025_140 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_189003_060 Hb_189003_060 Hb_114893_040--Hb_189003_060 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0864125 0.0505186 0.128514 0.141748 0.0605487 0.0602062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0239499 0.0753763 0.0713625 0.0675085 0.357838

CAGE analysis