Hb_000331_490

Information

Type -
Description -
Location Contig331: 409754-411296
Sequence    

Annotation

kegg
ID rcu:RCOM_1507390
description coproporphyrinigen III oxidase, putative (EC:1.3.99.22)
nr
ID XP_012079907.1
description PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
swissprot
ID P73245
description Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1917 PE=2 SV=1
trembl
ID A0A067KFD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11351 PE=4 SV=1
Gene Ontology
ID GO:0005737
description radical s-adenosyl methionine domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_490 0.0 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
2 Hb_002232_390 0.0971448371 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
3 Hb_003475_020 0.0983164053 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
4 Hb_009020_040 0.1057703964 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
5 Hb_000368_090 0.1121402036 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
6 Hb_000230_290 0.1179970413 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000878_030 0.1194016466 - - calcium-dependent protein kinase, putative [Ricinus communis]
8 Hb_009767_130 0.1194197305 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
9 Hb_001449_070 0.1201791869 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007763_070 0.120338704 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_005250_010 0.1220069747 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
12 Hb_001220_050 0.122845779 - - DNA-damage-inducible protein f, putative [Ricinus communis]
13 Hb_000327_110 0.1245959372 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
14 Hb_007054_070 0.1262817217 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
15 Hb_000261_050 0.1292759278 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
16 Hb_021495_020 0.12929161 - - chitinase, putative [Ricinus communis]
17 Hb_002685_060 0.1305199409 - - 30S ribosomal protein S5, putative [Ricinus communis]
18 Hb_007769_040 0.1310381773 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_001314_080 0.1318846968 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
20 Hb_002217_260 0.1320949073 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_490 Hb_000331_490 Hb_002232_390 Hb_002232_390 Hb_000331_490--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_000331_490--Hb_003475_020 Hb_009020_040 Hb_009020_040 Hb_000331_490--Hb_009020_040 Hb_000368_090 Hb_000368_090 Hb_000331_490--Hb_000368_090 Hb_000230_290 Hb_000230_290 Hb_000331_490--Hb_000230_290 Hb_000878_030 Hb_000878_030 Hb_000331_490--Hb_000878_030 Hb_009178_060 Hb_009178_060 Hb_002232_390--Hb_009178_060 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_002232_390--Hb_003475_020 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_001220_050 Hb_001220_050 Hb_009020_040--Hb_001220_050 Hb_000200_350 Hb_000200_350 Hb_009020_040--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_009020_040--Hb_000388_150 Hb_005250_010 Hb_005250_010 Hb_009020_040--Hb_005250_010 Hb_009020_040--Hb_002232_390 Hb_009020_040--Hb_003475_020 Hb_174865_040 Hb_174865_040 Hb_000368_090--Hb_174865_040 Hb_012573_050 Hb_012573_050 Hb_000368_090--Hb_012573_050 Hb_001277_100 Hb_001277_100 Hb_000368_090--Hb_001277_100 Hb_000327_110 Hb_000327_110 Hb_000368_090--Hb_000327_110 Hb_000941_100 Hb_000941_100 Hb_000368_090--Hb_000941_100 Hb_156850_100 Hb_156850_100 Hb_000368_090--Hb_156850_100 Hb_009486_040 Hb_009486_040 Hb_000230_290--Hb_009486_040 Hb_001916_090 Hb_001916_090 Hb_000230_290--Hb_001916_090 Hb_021495_020 Hb_021495_020 Hb_000230_290--Hb_021495_020 Hb_001089_060 Hb_001089_060 Hb_000230_290--Hb_001089_060 Hb_007820_010 Hb_007820_010 Hb_000230_290--Hb_007820_010 Hb_000878_030--Hb_001220_050 Hb_001009_260 Hb_001009_260 Hb_000878_030--Hb_001009_260 Hb_000878_030--Hb_009020_040 Hb_004735_020 Hb_004735_020 Hb_000878_030--Hb_004735_020 Hb_114893_040 Hb_114893_040 Hb_000878_030--Hb_114893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47226 1.00098 1.40944 2.12614 1.1108 1.50623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.902107 1.24198 1.56984 0.657873 5.0317

CAGE analysis