Hb_002835_160

Information

Type -
Description -
Location Contig2835: 115223-118061
Sequence    

Annotation

kegg
ID tcc:TCM_012228
description Kinase superfamily protein
nr
ID XP_007036388.1
description Kinase superfamily protein [Theobroma cacao]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A061G1G4
description Kinase superfamily protein OS=Theobroma cacao GN=TCM_012228 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29640: 115096-118330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_160 0.0 - - Kinase superfamily protein [Theobroma cacao]
2 Hb_114893_040 0.1033018811 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
3 Hb_000194_010 0.1201936174 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
4 Hb_029695_070 0.1303182589 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
5 Hb_002044_020 0.1367028767 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
6 Hb_000061_150 0.1383940175 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
7 Hb_189003_060 0.1388870685 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_006846_070 0.1432891317 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
9 Hb_001454_150 0.1433051106 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
10 Hb_001438_010 0.1474579602 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
11 Hb_011861_050 0.1480130109 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
12 Hb_002027_410 0.1497340499 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
13 Hb_002915_010 0.1505965408 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
14 Hb_000976_190 0.1513956421 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
15 Hb_000085_070 0.1535370466 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000676_060 0.1536265009 - - Sec14 cytosolic factor, putative [Ricinus communis]
17 Hb_000480_040 0.1548024789 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
18 Hb_000265_070 0.1550866124 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
19 Hb_002997_070 0.1555824856 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_006905_030 0.1567850244 - - -

Gene co-expression network

sample Hb_002835_160 Hb_002835_160 Hb_114893_040 Hb_114893_040 Hb_002835_160--Hb_114893_040 Hb_000194_010 Hb_000194_010 Hb_002835_160--Hb_000194_010 Hb_029695_070 Hb_029695_070 Hb_002835_160--Hb_029695_070 Hb_002044_020 Hb_002044_020 Hb_002835_160--Hb_002044_020 Hb_000061_150 Hb_000061_150 Hb_002835_160--Hb_000061_150 Hb_189003_060 Hb_189003_060 Hb_002835_160--Hb_189003_060 Hb_003025_140 Hb_003025_140 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_114893_040--Hb_189003_060 Hb_011861_050 Hb_011861_050 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040 Hb_000194_010--Hb_000061_150 Hb_001454_150 Hb_001454_150 Hb_000194_010--Hb_001454_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_029695_070--Hb_002044_020 Hb_070624_010 Hb_070624_010 Hb_029695_070--Hb_070624_010 Hb_000265_070 Hb_000265_070 Hb_029695_070--Hb_000265_070 Hb_000645_180 Hb_000645_180 Hb_029695_070--Hb_000645_180 Hb_003160_070 Hb_003160_070 Hb_029695_070--Hb_003160_070 Hb_005665_090 Hb_005665_090 Hb_029695_070--Hb_005665_090 Hb_000094_100 Hb_000094_100 Hb_002044_020--Hb_000094_100 Hb_001789_160 Hb_001789_160 Hb_002044_020--Hb_001789_160 Hb_002044_020--Hb_000061_150 Hb_002044_020--Hb_000645_180 Hb_002044_020--Hb_000265_070 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_006846_070 Hb_006846_070 Hb_000061_150--Hb_006846_070 Hb_000061_150--Hb_001454_150 Hb_000473_050 Hb_000473_050 Hb_189003_060--Hb_000473_050 Hb_005147_080 Hb_005147_080 Hb_189003_060--Hb_005147_080 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_001959_060 Hb_001959_060 Hb_189003_060--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_189003_060--Hb_000684_430 Hb_189003_060--Hb_000480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66543 1.59585 13.5091 3.61407 1.59669 3.8098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18853 1.75081 3.43242 4.51771 13.2785

CAGE analysis