Hb_006198_130

Information

Type -
Description -
Location Contig6198: 88479-95004
Sequence    

Annotation

kegg
ID rcu:RCOM_1721100
description hypothetical protein
nr
ID XP_012085126.1
description PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17558 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51381: 88565-94140 , PASA_asmbl_51382: 90028-91675 , PASA_asmbl_51383: 91685-92081 , PASA_asmbl_51384: 93438-94894 , PASA_asmbl_51385: 93197-93302 , PASA_asmbl_51386: 92086-92316 , PASA_asmbl_51387: 89509-89918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_130 0.0 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
2 Hb_003171_030 0.0706499773 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
3 Hb_009687_020 0.0723762354 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
4 Hb_000059_270 0.0824857262 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
5 Hb_001269_500 0.0925985955 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
6 Hb_163950_070 0.0982776971 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
7 Hb_001220_050 0.1020385284 - - DNA-damage-inducible protein f, putative [Ricinus communis]
8 Hb_001723_030 0.1032413122 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
9 Hb_000309_020 0.1034115146 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
10 Hb_009288_040 0.1040334404 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
11 Hb_000665_270 0.11199788 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
12 Hb_000345_370 0.1131732314 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
13 Hb_000480_040 0.1133628613 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
14 Hb_000816_200 0.1164478325 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_000684_430 0.1178372052 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
16 Hb_004871_010 0.1179881208 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
17 Hb_006829_080 0.1180034841 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
18 Hb_001959_060 0.1182133946 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
19 Hb_000085_070 0.1192727935 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002542_160 0.1202802715 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006198_130 Hb_006198_130 Hb_003171_030 Hb_003171_030 Hb_006198_130--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_006198_130--Hb_009687_020 Hb_000059_270 Hb_000059_270 Hb_006198_130--Hb_000059_270 Hb_001269_500 Hb_001269_500 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_003171_030--Hb_009687_020 Hb_003171_030--Hb_000059_270 Hb_000816_200 Hb_000816_200 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_000608_390 Hb_000608_390 Hb_163950_070--Hb_000608_390 Hb_002986_090 Hb_002986_090 Hb_163950_070--Hb_002986_090 Hb_006787_090 Hb_006787_090 Hb_163950_070--Hb_006787_090 Hb_002044_020 Hb_002044_020 Hb_163950_070--Hb_002044_020 Hb_009288_040 Hb_009288_040 Hb_163950_070--Hb_009288_040 Hb_001220_050--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_001220_050--Hb_007769_040 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001220_050--Hb_001723_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92393 2.44239 11.9786 8.16509 4.48303 2.97133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06664 4.37364 1.77968 2.69056 19.7765

CAGE analysis