Hb_002986_090

Information

Type -
Description -
Location Contig2986: 74127-80333
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18070g
description POPTRDRAFT_760457; METHIONINE AMINOPEPTIDASE 1D family protein
nr
ID XP_012079212.1
description PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q9FV50
description Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1
trembl
ID A0A067KJA4
description Methionine aminopeptidase 1 OS=Jatropha curcas GN=JCGZ_12375 PE=3 SV=1
Gene Ontology
ID GO:0004177
description methionine aminopeptidase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31194: 74211-80330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_090 0.0 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_007217_010 0.0940050154 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
3 Hb_163950_070 0.096767554 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
4 Hb_009288_040 0.10108042 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
5 Hb_000094_100 0.1029733636 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
6 Hb_006907_060 0.1049351925 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_001959_060 0.1063585616 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
8 Hb_000926_080 0.107433679 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
9 Hb_025194_060 0.1078805149 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000608_390 0.1083722436 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
11 Hb_002107_050 0.1091749973 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_189003_060 0.1137646598 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003883_010 0.1157185072 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_001946_160 0.1159864581 - - putative chaperon P13.9 [Castanea sativa]
15 Hb_004117_040 0.1172633631 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
16 Hb_000976_190 0.1184090028 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
17 Hb_000181_060 0.1186050076 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
18 Hb_002044_020 0.1186712388 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
19 Hb_000194_010 0.1203865903 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
20 Hb_001124_190 0.12163622 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002986_090 Hb_002986_090 Hb_007217_010 Hb_007217_010 Hb_002986_090--Hb_007217_010 Hb_163950_070 Hb_163950_070 Hb_002986_090--Hb_163950_070 Hb_009288_040 Hb_009288_040 Hb_002986_090--Hb_009288_040 Hb_000094_100 Hb_000094_100 Hb_002986_090--Hb_000094_100 Hb_006907_060 Hb_006907_060 Hb_002986_090--Hb_006907_060 Hb_001959_060 Hb_001959_060 Hb_002986_090--Hb_001959_060 Hb_000212_250 Hb_000212_250 Hb_007217_010--Hb_000212_250 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_011476_030 Hb_011476_030 Hb_007217_010--Hb_011476_030 Hb_000392_450 Hb_000392_450 Hb_007217_010--Hb_000392_450 Hb_007217_010--Hb_000094_100 Hb_000608_390 Hb_000608_390 Hb_163950_070--Hb_000608_390 Hb_006198_130 Hb_006198_130 Hb_163950_070--Hb_006198_130 Hb_006787_090 Hb_006787_090 Hb_163950_070--Hb_006787_090 Hb_002044_020 Hb_002044_020 Hb_163950_070--Hb_002044_020 Hb_163950_070--Hb_009288_040 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_005665_090 Hb_005665_090 Hb_009288_040--Hb_005665_090 Hb_012779_080 Hb_012779_080 Hb_009288_040--Hb_012779_080 Hb_010620_050 Hb_010620_050 Hb_009288_040--Hb_010620_050 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_000094_100--Hb_012779_080 Hb_002915_010 Hb_002915_010 Hb_000094_100--Hb_002915_010 Hb_000094_100--Hb_005665_090 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_008705_020 Hb_008705_020 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_006829_080 Hb_006829_080 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24377 7.15068 49.5996 20.0488 10.1615 9.12943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37275 17.442 8.88882 8.46284 41.5064

CAGE analysis