Hb_006829_080

Information

Type -
Description -
Location Contig6829: 75523-77318
Sequence    

Annotation

kegg
ID rcu:RCOM_0586950
description hypothetical protein
nr
ID XP_012070776.1
description PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
swissprot
ID Q8VY88
description Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1
trembl
ID A0A067L4S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00846 PE=4 SV=1
Gene Ontology
ID GO:0008654
description protein lhcp translocation defect

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53894: 75600-77296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_080 0.0 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
2 Hb_001959_060 0.0700277041 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
3 Hb_000473_050 0.0741040074 - - chromatin regulatory protein sir2, putative [Ricinus communis]
4 Hb_000684_430 0.0791571038 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
5 Hb_002232_380 0.0829746691 - - malate dehydrogenase, putative [Ricinus communis]
6 Hb_004055_160 0.0839176699 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
7 Hb_000005_130 0.0870396031 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
8 Hb_005618_080 0.0894351702 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
9 Hb_000802_050 0.0897559559 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
10 Hb_003549_140 0.0904051937 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_001269_500 0.0938051215 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
12 Hb_009687_020 0.0950210783 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
13 Hb_002005_040 0.0997354488 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000402_020 0.1005389553 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_007426_170 0.1007657333 transcription factor TF Family: TCP -
16 Hb_003948_020 0.1020522851 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
17 Hb_000032_390 0.1024759299 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
18 Hb_189003_060 0.1026656571 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_002217_140 0.1033397596 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
20 Hb_001649_030 0.103526256 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006829_080 Hb_006829_080 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_000684_430 Hb_000684_430 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_000473_050--Hb_189003_060 Hb_158092_100 Hb_158092_100 Hb_000473_050--Hb_158092_100 Hb_009687_020 Hb_009687_020 Hb_000473_050--Hb_009687_020 Hb_000473_050--Hb_001959_060 Hb_000473_050--Hb_000684_430 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_000703_070 Hb_000703_070 Hb_002232_380--Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_002232_380--Hb_027298_020 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030 Hb_004055_160--Hb_002005_040 Hb_004055_160--Hb_009687_020 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_000005_130--Hb_000802_050 Hb_006620_070 Hb_006620_070 Hb_000005_130--Hb_006620_070 Hb_000005_130--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4135 14.5643 111.013 44.2667 13.1708 18.7405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8848 24.3977 13.3975 17.0006 156.254

CAGE analysis