Hb_000023_210

Information

Type -
Description -
Location Contig23: 456722-459329
Sequence    

Annotation

kegg
ID rcu:RCOM_0920350
description chlorophyll a oxygenase, putative (EC:1.14.13.82)
nr
ID XP_012076389.1
description PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
swissprot
ID O49931
description Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
trembl
ID A0A067KEQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07059 PE=4 SV=1
Gene Ontology
ID GO:0010277
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23949: 456689-459328
cDNA
(Sanger)
(ID:Location)		 013_F17.ab1: 456691-458097 , 013_L24.ab1: 456689-458143 , 017_K18.ab1: 456746-458016 , 025_C01.ab1: 456689-458215 , 032_G15.ab1: 456689-458171 , 037_A09.ab1: 456689-458187 , 049_C06.ab1: 456692-457103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_210 0.0 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
2 Hb_000402_170 0.1023712069 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
3 Hb_002304_180 0.1037851382 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
4 Hb_000300_020 0.1040287083 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
5 Hb_007002_010 0.1122180498 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
6 Hb_011053_020 0.1190503025 - - lipoic acid synthetase, putative [Ricinus communis]
7 Hb_000684_280 0.1209631063 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
8 Hb_126917_010 0.1215472026 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
9 Hb_011053_030 0.1248908826 - - -
10 Hb_000352_220 0.1303902009 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_036790_120 0.1311691465 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
12 Hb_000834_080 0.1319892429 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
13 Hb_000012_010 0.1338990046 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
14 Hb_000866_050 0.1360447776 - - phosphate transporter [Manihot esculenta]
15 Hb_183963_010 0.13652539 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
16 Hb_000189_520 0.1373469153 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
17 Hb_001266_160 0.1398393581 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
18 Hb_000107_590 0.1400062585 - - PREDICTED: tricalbin-3 [Jatropha curcas]
19 Hb_003427_080 0.1435471904 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
20 Hb_003494_030 0.1458894801 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000023_210 Hb_000023_210 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_002304_180 Hb_002304_180 Hb_000023_210--Hb_002304_180 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_007002_010 Hb_007002_010 Hb_000023_210--Hb_007002_010 Hb_011053_020 Hb_011053_020 Hb_000023_210--Hb_011053_020 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_003427_080 Hb_003427_080 Hb_000402_170--Hb_003427_080 Hb_036790_120 Hb_036790_120 Hb_000402_170--Hb_036790_120 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_000402_170--Hb_002304_180 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_000667_140 Hb_000667_140 Hb_002304_180--Hb_000667_140 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250 Hb_009687_020 Hb_009687_020 Hb_000300_020--Hb_009687_020 Hb_000352_220 Hb_000352_220 Hb_000300_020--Hb_000352_220 Hb_126917_010 Hb_126917_010 Hb_000300_020--Hb_126917_010 Hb_003171_030 Hb_003171_030 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_007002_010--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_007002_010--Hb_011053_020 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000684_280--Hb_003941_030 Hb_000661_090 Hb_000661_090 Hb_000684_280--Hb_000661_090 Hb_000684_280--Hb_036790_120 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_011053_030 Hb_011053_030 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1664 4.48679 25.9415 30.9846 6.20574 7.41472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.22988 12.5709 10.4252 6.17595 103.589

CAGE analysis