Hb_000683_080

Information

Type -
Description -
Location Contig683: 77352-78963
Sequence    

Annotation

kegg
ID cic:CICLE_v10028086mg
description hypothetical protein
nr
ID KCW63708.1
description hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059BC49
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_G013602 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000683_080 0.0 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
2 Hb_007002_010 0.1101430235 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
3 Hb_000495_080 0.1167970267 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
4 Hb_000352_220 0.1204471895 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_000890_110 0.1209902012 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
6 Hb_003226_190 0.1445895054 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
7 Hb_000189_520 0.1528795089 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
8 Hb_021313_010 0.1536282467 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
9 Hb_011053_020 0.1549857388 - - lipoic acid synthetase, putative [Ricinus communis]
10 Hb_000460_070 0.1614842303 - - luminal binding protein [Gossypium hirsutum]
11 Hb_000866_050 0.1623970317 - - phosphate transporter [Manihot esculenta]
12 Hb_000189_250 0.164285783 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
13 Hb_002534_030 0.1645966641 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_008511_140 0.1646769235 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
15 Hb_000058_080 0.1672472586 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000012_160 0.1716946296 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
17 Hb_010288_060 0.1719749962 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
18 Hb_002671_130 0.173590746 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
19 Hb_000035_020 0.1749342912 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
20 Hb_003884_040 0.175891617 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000683_080 Hb_000683_080 Hb_007002_010 Hb_007002_010 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000683_080--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_000683_080--Hb_000890_110 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_007002_010--Hb_000352_220 Hb_007002_010--Hb_000890_110 Hb_007002_010--Hb_000495_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_000495_080--Hb_000352_220 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123053 0.100623 0.154335 0.358125 0.0949892 0.0858123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 0.174958 0.274854 0.37947 1.80804

CAGE analysis