Hb_001621_060

Information

Type -
Description -
Location Contig1621: 113584-117535
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05900g
description POPTRDRAFT_563930; thylakoid lumenal 15 kDa family protein
nr
ID XP_012088725.1
description PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
swissprot
ID O22160
description Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2
trembl
ID A0A067L927
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01417 PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal 15 kda protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14619: 113590-117478 , PASA_asmbl_14620: 113590-117478
cDNA
(Sanger)
(ID:Location)		 011_J02.ab1: 113627-117459 , 026_C21.ab1: 113831-117455 , 047_C04.ab1: 113702-117478 , 049_G22.ab1: 113714-117459

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_060 0.0 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
2 Hb_001792_030 0.0884310923 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
3 Hb_010577_040 0.0921369253 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
4 Hb_000189_520 0.1055989455 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
5 Hb_004109_160 0.1059572087 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
6 Hb_008698_010 0.1071064705 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_003935_080 0.1119167943 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
8 Hb_002078_300 0.1161605569 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
9 Hb_000473_060 0.1185582661 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
10 Hb_005489_090 0.1307321388 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
11 Hb_020378_060 0.130922613 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
12 Hb_000866_050 0.1362456186 - - phosphate transporter [Manihot esculenta]
13 Hb_000723_290 0.1416340839 - - calcium lipid binding protein, putative [Ricinus communis]
14 Hb_007632_170 0.1421277643 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
15 Hb_001294_030 0.1437541705 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
16 Hb_000058_080 0.1446787913 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_005725_220 0.1465485166 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
18 Hb_000594_100 0.147719084 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
19 Hb_114861_010 0.1509795695 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
20 Hb_000983_070 0.1533564609 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001621_060 Hb_001621_060 Hb_001792_030 Hb_001792_030 Hb_001621_060--Hb_001792_030 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_000189_520 Hb_000189_520 Hb_001621_060--Hb_000189_520 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_010577_040--Hb_003935_080 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_010577_040--Hb_005489_090 Hb_010577_040--Hb_000594_100 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_004109_160--Hb_000723_290 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_002078_300 Hb_002078_300 Hb_004109_160--Hb_002078_300 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_000460_070 Hb_000460_070 Hb_008698_010--Hb_000460_070 Hb_002534_030 Hb_002534_030 Hb_008698_010--Hb_002534_030 Hb_008698_010--Hb_001792_030 Hb_001229_020 Hb_001229_020 Hb_008698_010--Hb_001229_020 Hb_008698_010--Hb_002078_300 Hb_003935_080--Hb_005489_090 Hb_003935_080--Hb_000594_100 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_003935_080--Hb_000866_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19009 2.36566 11.1296 13.0941 1.49364 3.8144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.89825 15.7883 10.7202 7.50927 53.8162

CAGE analysis