Hb_002534_030

Information

Type transcription factor
Description TF Family: M-type
Location Contig2534: 6846-13225
Sequence    

Annotation

kegg
ID rcu:RCOM_1471600
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002514742.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q38836
description Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1
trembl
ID B9RLX3
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1471600 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mads-box protein defh21-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26481: 8014-11790 , PASA_asmbl_26483: 10873-11251 , PASA_asmbl_26485: 6717-11790 , PASA_asmbl_26487: 12053-13148 , PASA_asmbl_26488: 14203-14729
cDNA
(Sanger)
(ID:Location)		 016_J05r.ab1: 6957-7875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_030 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_005588_110 0.1010856329 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
3 Hb_008698_010 0.1250518105 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_067069_010 0.1260491447 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
5 Hb_002078_300 0.1341570172 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
6 Hb_001484_080 0.1524848237 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_000890_110 0.1527844502 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
8 Hb_000189_520 0.1538013435 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_000495_080 0.1538969505 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
10 Hb_000189_250 0.1551379954 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
11 Hb_005282_020 0.1551975198 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
12 Hb_001621_060 0.1577932151 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
13 Hb_000934_020 0.1581405328 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
14 Hb_001792_030 0.1586140146 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
15 Hb_000012_160 0.1609234178 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
16 Hb_036790_120 0.1613517712 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
17 Hb_003941_030 0.1633102851 - - Protease ecfE, putative [Ricinus communis]
18 Hb_000683_080 0.1645966641 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
19 Hb_002685_060 0.1660269286 - - 30S ribosomal protein S5, putative [Ricinus communis]
20 Hb_000684_280 0.1667733229 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002534_030 Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_002534_030--Hb_005588_110 Hb_008698_010 Hb_008698_010 Hb_002534_030--Hb_008698_010 Hb_067069_010 Hb_067069_010 Hb_002534_030--Hb_067069_010 Hb_002078_300 Hb_002078_300 Hb_002534_030--Hb_002078_300 Hb_001484_080 Hb_001484_080 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110 Hb_000296_080 Hb_000296_080 Hb_005588_110--Hb_000296_080 Hb_005588_110--Hb_001484_080 Hb_000754_050 Hb_000754_050 Hb_005588_110--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_005588_110--Hb_000402_170 Hb_006637_080 Hb_006637_080 Hb_005588_110--Hb_006637_080 Hb_001621_060 Hb_001621_060 Hb_008698_010--Hb_001621_060 Hb_000460_070 Hb_000460_070 Hb_008698_010--Hb_000460_070 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_001229_020 Hb_001229_020 Hb_008698_010--Hb_001229_020 Hb_008698_010--Hb_002078_300 Hb_001889_010 Hb_001889_010 Hb_067069_010--Hb_001889_010 Hb_067069_010--Hb_005588_110 Hb_067069_010--Hb_008698_010 Hb_000012_160 Hb_000012_160 Hb_067069_010--Hb_000012_160 Hb_067069_010--Hb_006637_080 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02036 4.11825 7.54204 6.96682 3.77735 7.50993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21362 11.6957 12.0773 4.9141 65.2644

CAGE analysis