Hb_000296_080

Information

Type -
Description -
Location Contig296: 134628-143282
Sequence    

Annotation

kegg
ID rcu:RCOM_0238050
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085913.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
swissprot
ID O82178
description Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
trembl
ID A0A067K256
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22312 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30940: 137690-137788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000296_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
2 Hb_007894_220 0.1040380692 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
3 Hb_005588_110 0.1166828477 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
4 Hb_006637_080 0.1368862624 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
5 Hb_000754_050 0.1391682866 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_000402_170 0.1627029986 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
7 Hb_003427_080 0.1671362681 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
8 Hb_002027_410 0.1696918729 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
9 Hb_002685_060 0.1704563035 - - 30S ribosomal protein S5, putative [Ricinus communis]
10 Hb_003777_020 0.1769061885 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
11 Hb_003878_080 0.1815599924 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
12 Hb_000012_160 0.1844716737 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
13 Hb_005282_020 0.1884666482 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
14 Hb_000053_120 0.1889975632 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
15 Hb_004846_050 0.1890636983 - - PREDICTED: uncharacterized protein ycf23-like [Jatropha curcas]
16 Hb_001723_030 0.1902510537 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
17 Hb_002282_070 0.1904723532 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
18 Hb_036790_120 0.1906576824 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
19 Hb_002534_030 0.1921780302 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_001427_040 0.1922489004 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]

Gene co-expression network

sample Hb_000296_080 Hb_000296_080 Hb_007894_220 Hb_007894_220 Hb_000296_080--Hb_007894_220 Hb_005588_110 Hb_005588_110 Hb_000296_080--Hb_005588_110 Hb_006637_080 Hb_006637_080 Hb_000296_080--Hb_006637_080 Hb_000754_050 Hb_000754_050 Hb_000296_080--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_000296_080--Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_000296_080--Hb_003427_080 Hb_002518_120 Hb_002518_120 Hb_007894_220--Hb_002518_120 Hb_001427_040 Hb_001427_040 Hb_007894_220--Hb_001427_040 Hb_000012_160 Hb_000012_160 Hb_007894_220--Hb_000012_160 Hb_032258_010 Hb_032258_010 Hb_007894_220--Hb_032258_010 Hb_002282_070 Hb_002282_070 Hb_007894_220--Hb_002282_070 Hb_002534_030 Hb_002534_030 Hb_005588_110--Hb_002534_030 Hb_001484_080 Hb_001484_080 Hb_005588_110--Hb_001484_080 Hb_005588_110--Hb_000754_050 Hb_005588_110--Hb_000402_170 Hb_005588_110--Hb_006637_080 Hb_003777_020 Hb_003777_020 Hb_006637_080--Hb_003777_020 Hb_002027_410 Hb_002027_410 Hb_006637_080--Hb_002027_410 Hb_002685_060 Hb_002685_060 Hb_006637_080--Hb_002685_060 Hb_006637_080--Hb_002282_070 Hb_036790_120 Hb_036790_120 Hb_006637_080--Hb_036790_120 Hb_016461_030 Hb_016461_030 Hb_006637_080--Hb_016461_030 Hb_000754_050--Hb_001484_080 Hb_000754_050--Hb_000402_170 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270 Hb_000402_170--Hb_003427_080 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.540205 0.0320485 0.88863 0.203723 0.576306 0.670531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.466521 0.428229 0.462366 0.365542 3.86337

CAGE analysis