Hb_000754_050

Information

Type -
Description -
Location Contig754: 27536-28252
Sequence    

Annotation

kegg
ID rcu:RCOM_1293230
description Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative
nr
ID XP_012065545.1
description PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID P82658
description Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2
trembl
ID A0A067L4V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16749 PE=4 SV=1
Gene Ontology
ID GO:0009654
description thylakoid lumenal 19 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000754_050 0.0 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_001484_080 0.1310413453 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
3 Hb_000296_080 0.1391682866 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
4 Hb_005588_110 0.1455714176 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
5 Hb_000402_170 0.1494120734 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
6 Hb_036790_120 0.1497296322 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
7 Hb_000977_270 0.1544171997 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
8 Hb_003106_170 0.1547402518 - - Endonuclease III, putative [Ricinus communis]
9 Hb_006856_030 0.1584715393 - - Uridine kinase-like protein 4 [Glycine soja]
10 Hb_007044_250 0.1606313037 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007894_220 0.1607414002 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
12 Hb_001889_010 0.1623682839 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
13 Hb_001390_020 0.165746268 - - malate dehydrogenase, putative [Ricinus communis]
14 Hb_006637_080 0.1669057043 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
15 Hb_001792_030 0.169432231 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
16 Hb_067069_010 0.1694938451 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
17 Hb_002534_030 0.1703231837 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_001755_030 0.1713799372 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
19 Hb_000062_520 0.1716372971 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003427_080 0.1731003686 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000754_050 Hb_000754_050 Hb_001484_080 Hb_001484_080 Hb_000754_050--Hb_001484_080 Hb_000296_080 Hb_000296_080 Hb_000754_050--Hb_000296_080 Hb_005588_110 Hb_005588_110 Hb_000754_050--Hb_005588_110 Hb_000402_170 Hb_000402_170 Hb_000754_050--Hb_000402_170 Hb_036790_120 Hb_036790_120 Hb_000754_050--Hb_036790_120 Hb_000977_270 Hb_000977_270 Hb_000754_050--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_007894_220 Hb_007894_220 Hb_000296_080--Hb_007894_220 Hb_000296_080--Hb_005588_110 Hb_006637_080 Hb_006637_080 Hb_000296_080--Hb_006637_080 Hb_000296_080--Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_000296_080--Hb_003427_080 Hb_002534_030 Hb_002534_030 Hb_005588_110--Hb_002534_030 Hb_005588_110--Hb_001484_080 Hb_005588_110--Hb_000402_170 Hb_005588_110--Hb_006637_080 Hb_000402_170--Hb_003427_080 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_000977_270--Hb_007044_250 Hb_000977_270--Hb_003106_170 Hb_000977_270--Hb_002304_180 Hb_000977_270--Hb_003752_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23964 1.35518 14.4955 3.33791 7.09278 4.85465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8086 13.228 4.29301 5.4016 59.9207

CAGE analysis