Hb_005588_110

Information

Type -
Description -
Location Contig5588: 85474-86424
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12860g
description POPTRDRAFT_754981; hypothetical protein
nr
ID XP_002302439.1
description hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
swissprot
ID Q9FMZ0
description BRI1 kinase inhibitor 1 OS=Arabidopsis thaliana GN=BKI1 PE=1 SV=1
trembl
ID B9GNX0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s12860g PE=4 SV=1
Gene Ontology
ID GO:0005829
description bri1 kinase inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48638: 85064-85293 , PASA_asmbl_48639: 85620-85872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_110 0.0 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
2 Hb_002534_030 0.1010856329 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000296_080 0.1166828477 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
4 Hb_001484_080 0.1431121865 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_000754_050 0.1455714176 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
6 Hb_000402_170 0.1469463877 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
7 Hb_006637_080 0.1555180578 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
8 Hb_003427_080 0.1556419622 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
9 Hb_000890_110 0.157505314 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
10 Hb_067069_010 0.1618181798 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
11 Hb_000977_270 0.1632506527 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
12 Hb_007894_220 0.1632587508 - - PREDICTED: probable folate-biopterin transporter 4 [Jatropha curcas]
13 Hb_002685_060 0.1635321407 - - 30S ribosomal protein S5, putative [Ricinus communis]
14 Hb_036790_120 0.1638635166 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
15 Hb_000012_160 0.1641863623 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
16 Hb_005282_020 0.1659237655 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
17 Hb_002078_300 0.1710783225 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
18 Hb_007002_010 0.1711710747 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
19 Hb_000189_250 0.171350098 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
20 Hb_000934_020 0.1730425775 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_110 Hb_005588_110 Hb_002534_030 Hb_002534_030 Hb_005588_110--Hb_002534_030 Hb_000296_080 Hb_000296_080 Hb_005588_110--Hb_000296_080 Hb_001484_080 Hb_001484_080 Hb_005588_110--Hb_001484_080 Hb_000754_050 Hb_000754_050 Hb_005588_110--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_005588_110--Hb_000402_170 Hb_006637_080 Hb_006637_080 Hb_005588_110--Hb_006637_080 Hb_008698_010 Hb_008698_010 Hb_002534_030--Hb_008698_010 Hb_067069_010 Hb_067069_010 Hb_002534_030--Hb_067069_010 Hb_002078_300 Hb_002078_300 Hb_002534_030--Hb_002078_300 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110 Hb_007894_220 Hb_007894_220 Hb_000296_080--Hb_007894_220 Hb_000296_080--Hb_006637_080 Hb_000296_080--Hb_000754_050 Hb_000296_080--Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_000296_080--Hb_003427_080 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_000754_050--Hb_001484_080 Hb_000754_050--Hb_000402_170 Hb_036790_120 Hb_036790_120 Hb_000754_050--Hb_036790_120 Hb_000754_050--Hb_000977_270 Hb_000402_170--Hb_003427_080 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_003777_020 Hb_003777_020 Hb_006637_080--Hb_003777_020 Hb_002027_410 Hb_002027_410 Hb_006637_080--Hb_002027_410 Hb_002685_060 Hb_002685_060 Hb_006637_080--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_006637_080--Hb_002282_070 Hb_006637_080--Hb_036790_120 Hb_016461_030 Hb_016461_030 Hb_006637_080--Hb_016461_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91949 1.12232 10.0593 5.35456 5.28114 7.64721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44783 7.21564 11.1337 4.25558 64.5348

CAGE analysis