Hb_067069_010

Information

Type -
Description -
Location Contig67069: 3000-3353
Sequence    

Annotation

kegg
ID rcu:RCOM_1512450
description Endonuclease III, putative
nr
ID KDP31148.1
description hypothetical protein JCGZ_11524 [Jatropha curcas]
swissprot
ID F4JCQ3
description Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1
trembl
ID A0A067K800
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11524 PE=4 SV=1
Gene Ontology
ID GO:0003824
description demeter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067069_010 0.0 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
2 Hb_002534_030 0.1260491447 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_001889_010 0.1611776676 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
4 Hb_005588_110 0.1618181798 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
5 Hb_008698_010 0.161847009 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000012_160 0.1631372649 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
7 Hb_006637_080 0.1644140321 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
8 Hb_001484_080 0.1681660149 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
9 Hb_000062_520 0.1687965109 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000754_050 0.1694938451 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_001792_030 0.1710065056 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
12 Hb_001621_060 0.1720247563 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
13 Hb_000156_210 0.174075756 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_002078_300 0.1745694969 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
15 Hb_000164_140 0.1814974682 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_036790_120 0.1836868185 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
17 Hb_001490_030 0.1844763568 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
18 Hb_004109_160 0.1875235495 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
19 Hb_003544_010 0.1888477826 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000890_110 0.1901205759 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_067069_010 Hb_067069_010 Hb_002534_030 Hb_002534_030 Hb_067069_010--Hb_002534_030 Hb_001889_010 Hb_001889_010 Hb_067069_010--Hb_001889_010 Hb_005588_110 Hb_005588_110 Hb_067069_010--Hb_005588_110 Hb_008698_010 Hb_008698_010 Hb_067069_010--Hb_008698_010 Hb_000012_160 Hb_000012_160 Hb_067069_010--Hb_000012_160 Hb_006637_080 Hb_006637_080 Hb_067069_010--Hb_006637_080 Hb_002534_030--Hb_005588_110 Hb_002534_030--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_002534_030--Hb_002078_300 Hb_001484_080 Hb_001484_080 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110 Hb_000112_060 Hb_000112_060 Hb_001889_010--Hb_000112_060 Hb_010128_020 Hb_010128_020 Hb_001889_010--Hb_010128_020 Hb_000164_140 Hb_000164_140 Hb_001889_010--Hb_000164_140 Hb_036790_120 Hb_036790_120 Hb_001889_010--Hb_036790_120 Hb_001792_030 Hb_001792_030 Hb_001889_010--Hb_001792_030 Hb_114861_010 Hb_114861_010 Hb_001889_010--Hb_114861_010 Hb_000296_080 Hb_000296_080 Hb_005588_110--Hb_000296_080 Hb_005588_110--Hb_001484_080 Hb_000754_050 Hb_000754_050 Hb_005588_110--Hb_000754_050 Hb_000402_170 Hb_000402_170 Hb_005588_110--Hb_000402_170 Hb_005588_110--Hb_006637_080 Hb_001621_060 Hb_001621_060 Hb_008698_010--Hb_001621_060 Hb_000460_070 Hb_000460_070 Hb_008698_010--Hb_000460_070 Hb_008698_010--Hb_001792_030 Hb_001229_020 Hb_001229_020 Hb_008698_010--Hb_001229_020 Hb_008698_010--Hb_002078_300 Hb_005282_020 Hb_005282_020 Hb_000012_160--Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_000012_160--Hb_003544_010 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_002685_060 Hb_002685_060 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070 Hb_003777_020 Hb_003777_020 Hb_006637_080--Hb_003777_020 Hb_002027_410 Hb_002027_410 Hb_006637_080--Hb_002027_410 Hb_006637_080--Hb_002685_060 Hb_006637_080--Hb_002282_070 Hb_006637_080--Hb_036790_120 Hb_016461_030 Hb_016461_030 Hb_006637_080--Hb_016461_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16848 0.828362 3.30844 2.28676 0.622275 4.2422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08193 6.81646 2.76692 3.10021 24.2153

CAGE analysis