Hb_001889_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1889: 350-3364
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13890g
description POPTRDRAFT_579030; hypothetical protein
nr
ID XP_012068462.1
description PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
swissprot
ID Q9LU68
description Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1
trembl
ID A0A067LAG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03224 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein chloroplast import apparatus 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18632: 1639-2760 , PASA_asmbl_18633: 2016-2121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001889_010 0.0 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
2 Hb_000112_060 0.1156919832 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
3 Hb_010128_020 0.1271221645 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
4 Hb_000164_140 0.1285625891 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_036790_120 0.1329565136 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
6 Hb_001792_030 0.1345277993 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
7 Hb_114861_010 0.1373429442 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
8 Hb_000110_230 0.1408273496 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
9 Hb_016461_030 0.1409924485 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_003777_020 0.1412825927 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
11 Hb_000983_070 0.1447480866 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029920_030 0.1456042363 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
13 Hb_004241_020 0.148873865 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
14 Hb_001484_080 0.1520381281 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_002027_410 0.1528214326 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
16 Hb_000059_270 0.1534500473 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
17 Hb_005725_220 0.154558925 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
18 Hb_003813_020 0.1555913019 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
19 Hb_006637_080 0.156906929 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
20 Hb_002282_070 0.157126649 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001889_010 Hb_001889_010 Hb_000112_060 Hb_000112_060 Hb_001889_010--Hb_000112_060 Hb_010128_020 Hb_010128_020 Hb_001889_010--Hb_010128_020 Hb_000164_140 Hb_000164_140 Hb_001889_010--Hb_000164_140 Hb_036790_120 Hb_036790_120 Hb_001889_010--Hb_036790_120 Hb_001792_030 Hb_001792_030 Hb_001889_010--Hb_001792_030 Hb_114861_010 Hb_114861_010 Hb_001889_010--Hb_114861_010 Hb_000112_060--Hb_010128_020 Hb_000112_060--Hb_036790_120 Hb_007426_170 Hb_007426_170 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_010128_020--Hb_003029_020 Hb_003124_120 Hb_003124_120 Hb_010128_020--Hb_003124_120 Hb_000983_070 Hb_000983_070 Hb_010128_020--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_010128_020--Hb_002075_030 Hb_000816_200 Hb_000816_200 Hb_010128_020--Hb_000816_200 Hb_005725_220 Hb_005725_220 Hb_000164_140--Hb_005725_220 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_029920_030 Hb_029920_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_036790_120--Hb_010128_020 Hb_000189_520 Hb_000189_520 Hb_001792_030--Hb_000189_520 Hb_001621_060 Hb_001621_060 Hb_001792_030--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_001484_080 Hb_001484_080 Hb_114861_010--Hb_001484_080 Hb_114861_010--Hb_001792_030 Hb_007044_250 Hb_007044_250 Hb_114861_010--Hb_007044_250 Hb_114861_010--Hb_000189_520 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59841 1.35574 5.59307 1.68233 0.902922 1.64606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59618 4.05184 1.50901 3.12025 15.627

CAGE analysis