Hb_000110_230

Information

Type -
Description -
Location Contig110: 290122-291180
Sequence    

Annotation

kegg
ID rcu:RCOM_0353270
description Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative
nr
ID XP_002529130.1
description Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P82412
description 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1
trembl
ID B9ST11
description Plastid-specific 30S ribosomal protein 3, chloroplast, putative OS=Ricinus communis GN=RCOM_0353270 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03060: 290175-291180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_230 0.0 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
2 Hb_000164_140 0.1089983503 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_005725_220 0.1163662505 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
4 Hb_029920_030 0.1204626138 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
5 Hb_000042_290 0.1224466976 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_005276_010 0.1228509368 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
7 Hb_036790_120 0.124613049 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
8 Hb_007426_170 0.1246646818 transcription factor TF Family: TCP -
9 Hb_000059_270 0.1261433383 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
10 Hb_001124_180 0.1267284262 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
11 Hb_088500_010 0.1281846815 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
12 Hb_114861_010 0.1282229621 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
13 Hb_005489_090 0.1287160975 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
14 Hb_000112_060 0.1308820497 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
15 Hb_006829_080 0.1325937857 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
16 Hb_000473_050 0.1343255733 - - chromatin regulatory protein sir2, putative [Ricinus communis]
17 Hb_000816_200 0.1346468844 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
18 Hb_001792_030 0.137162986 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
19 Hb_000977_270 0.1380089467 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
20 Hb_000627_300 0.1383944692 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]

Gene co-expression network

sample Hb_000110_230 Hb_000110_230 Hb_000164_140 Hb_000164_140 Hb_000110_230--Hb_000164_140 Hb_005725_220 Hb_005725_220 Hb_000110_230--Hb_005725_220 Hb_029920_030 Hb_029920_030 Hb_000110_230--Hb_029920_030 Hb_000042_290 Hb_000042_290 Hb_000110_230--Hb_000042_290 Hb_005276_010 Hb_005276_010 Hb_000110_230--Hb_005276_010 Hb_036790_120 Hb_036790_120 Hb_000110_230--Hb_036790_120 Hb_000164_140--Hb_005725_220 Hb_000164_140--Hb_005276_010 Hb_002078_300 Hb_002078_300 Hb_000164_140--Hb_002078_300 Hb_005846_030 Hb_005846_030 Hb_000164_140--Hb_005846_030 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_005725_220--Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_029920_030--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_029920_030--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_029920_030--Hb_001195_770 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_001946_160 Hb_001946_160 Hb_005276_010--Hb_001946_160 Hb_000941_100 Hb_000941_100 Hb_005276_010--Hb_000941_100 Hb_005276_010--Hb_016461_030 Hb_005276_010--Hb_000816_200 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00581 3.61345 32.1778 13.9649 4.96367 6.18553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9831 11.1355 8.41078 5.95822 59.9525

CAGE analysis