Hb_000402_170

Information

Type -
Description -
Location Contig402: 166214-172313
Sequence    

Annotation

kegg
ID cit:102611899
description glutamate--glyoxylate aminotransferase 2-like
nr
ID XP_012085470.1
description PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
swissprot
ID Q9S7E9
description Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1
trembl
ID A0A067JRR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17804 PE=4 SV=1
Gene Ontology
ID GO:0008483
description glutamate--glyoxylate aminotransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39932: 166424-172313
cDNA
(Sanger)
(ID:Location)		 008_M22.ab1: 166424-169254 , 022_N21.ab1: 166450-169330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_170 0.0 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
2 Hb_003427_080 0.0802681259 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
3 Hb_036790_120 0.0974587676 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
4 Hb_000023_210 0.1023712069 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
5 Hb_000300_020 0.1128943216 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
6 Hb_001723_030 0.1137084476 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
7 Hb_002304_180 0.1140588609 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
8 Hb_000667_140 0.117195462 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
9 Hb_007002_010 0.1208757143 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
10 Hb_003494_030 0.1243999556 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
11 Hb_000803_240 0.1252695866 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
12 Hb_000352_220 0.1330884293 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_000977_270 0.1344112968 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
14 Hb_166127_030 0.1348294922 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_126917_010 0.1348893546 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
16 Hb_000890_110 0.136224768 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
17 Hb_000038_020 0.137149975 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
18 Hb_158144_020 0.1372447244 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
19 Hb_000189_250 0.1380375682 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
20 Hb_006856_030 0.1384472045 - - Uridine kinase-like protein 4 [Glycine soja]

Gene co-expression network

sample Hb_000402_170 Hb_000402_170 Hb_003427_080 Hb_003427_080 Hb_000402_170--Hb_003427_080 Hb_036790_120 Hb_036790_120 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003077_130 Hb_003077_130 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_000023_210--Hb_002304_180 Hb_000023_210--Hb_000300_020 Hb_007002_010 Hb_007002_010 Hb_000023_210--Hb_007002_010 Hb_011053_020 Hb_011053_020 Hb_000023_210--Hb_011053_020 Hb_000023_210--Hb_000684_280 Hb_009687_020 Hb_009687_020 Hb_000300_020--Hb_009687_020 Hb_000352_220 Hb_000352_220 Hb_000300_020--Hb_000352_220 Hb_126917_010 Hb_126917_010 Hb_000300_020--Hb_126917_010 Hb_003171_030 Hb_003171_030 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_002304_180--Hb_000667_140 Hb_002304_180--Hb_000977_270 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0259 12.5281 100.437 66.5676 33.7762 41.2532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.067 37.2381 26.3368 34.4153 370.139

CAGE analysis