Hb_166127_030

Information

Type -
Description -
Location Contig166127: 16346-18049
Sequence    

Annotation

kegg
ID rcu:RCOM_1576530
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002513427.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID A3KPF8
description Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1
trembl
ID B9RI58
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1576530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166127_030 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000640_260 0.089573767 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
3 Hb_000189_250 0.0928721696 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_002671_130 0.101503791 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
5 Hb_000803_240 0.1029497805 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
6 Hb_000934_020 0.1058496318 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
7 Hb_021409_190 0.1178702597 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
8 Hb_014361_110 0.1199824484 - - RNA binding protein, putative [Ricinus communis]
9 Hb_003029_140 0.1256840567 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
10 Hb_000661_090 0.1257941658 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_003077_130 0.1270069113 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
12 Hb_003427_080 0.1285778335 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
13 Hb_036790_120 0.1296659867 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
14 Hb_005332_150 0.1301327592 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
15 Hb_000537_070 0.1311345528 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
16 Hb_000069_490 0.1316272821 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001723_030 0.1327703077 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
18 Hb_000352_220 0.1329083566 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_001890_010 0.1338978362 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_000402_170 0.1348294922 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_166127_030 Hb_166127_030 Hb_000640_260 Hb_000640_260 Hb_166127_030--Hb_000640_260 Hb_000189_250 Hb_000189_250 Hb_166127_030--Hb_000189_250 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000803_240 Hb_000803_240 Hb_166127_030--Hb_000803_240 Hb_000934_020 Hb_000934_020 Hb_166127_030--Hb_000934_020 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190 Hb_001890_010 Hb_001890_010 Hb_000640_260--Hb_001890_010 Hb_000640_260--Hb_021409_190 Hb_000640_260--Hb_000934_020 Hb_000640_260--Hb_000189_250 Hb_003029_140 Hb_003029_140 Hb_000640_260--Hb_003029_140 Hb_000189_250--Hb_000934_020 Hb_036790_120 Hb_036790_120 Hb_000189_250--Hb_036790_120 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080 Hb_000661_090 Hb_000661_090 Hb_002671_130--Hb_000661_090 Hb_003124_120 Hb_003124_120 Hb_002671_130--Hb_003124_120 Hb_016461_030 Hb_016461_030 Hb_002671_130--Hb_016461_030 Hb_002671_130--Hb_000640_260 Hb_000816_200 Hb_000816_200 Hb_002671_130--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_000934_020--Hb_007576_150 Hb_000934_020--Hb_001890_010 Hb_000069_490 Hb_000069_490 Hb_000934_020--Hb_000069_490 Hb_008616_040 Hb_008616_040 Hb_021409_190--Hb_008616_040 Hb_021409_190--Hb_003029_140 Hb_018043_020 Hb_018043_020 Hb_021409_190--Hb_018043_020 Hb_001109_160 Hb_001109_160 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57964 1.42555 4.18075 2.16231 0.831004 1.26083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29607 0.637322 1.48348 2.5229 13.9797

CAGE analysis