Hb_002304_180

Information

Type -
Description -
Location Contig2304: 133169-135436
Sequence    

Annotation

kegg
ID tcc:TCM_029754
description P-loop containing nucleoside triphosphate hydrolases superfamily protein
nr
ID XP_012091733.1
description PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
swissprot
ID P93162
description Magnesium-chelatase subunit ChlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1
trembl
ID A0A067JNH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21530 PE=4 SV=1
Gene Ontology
ID GO:0005524
description magnesium-chelatase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24227: 133178-135379
cDNA
(Sanger)
(ID:Location)		 043_H19.ab1: 134049-135347

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_180 0.0 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
2 Hb_003494_030 0.0957892316 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
3 Hb_000667_140 0.0996025548 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
4 Hb_000977_270 0.1028643596 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
5 Hb_000023_210 0.1037851382 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
6 Hb_007044_250 0.1042727035 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000402_170 0.1140588609 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
8 Hb_000012_010 0.1146836611 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
9 Hb_001266_160 0.118225556 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
10 Hb_003106_170 0.1232274451 - - Endonuclease III, putative [Ricinus communis]
11 Hb_036790_120 0.1235383839 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
12 Hb_005563_040 0.1294941922 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
13 Hb_000032_390 0.1366573526 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
14 Hb_126917_010 0.137573088 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
15 Hb_000803_170 0.1396435793 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
16 Hb_000317_180 0.1439846714 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
17 Hb_006829_080 0.144485952 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
18 Hb_000029_330 0.1451305217 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
19 Hb_000189_520 0.14554003 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
20 Hb_000038_020 0.1478211665 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002304_180 Hb_002304_180 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_000667_140 Hb_000667_140 Hb_002304_180--Hb_000667_140 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_000023_210 Hb_000023_210 Hb_002304_180--Hb_000023_210 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_002232_380 Hb_002232_380 Hb_003494_030--Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_003494_030--Hb_000667_140 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070 Hb_000977_270--Hb_007044_250 Hb_003106_170 Hb_003106_170 Hb_000977_270--Hb_003106_170 Hb_036790_120 Hb_036790_120 Hb_000977_270--Hb_036790_120 Hb_001484_080 Hb_001484_080 Hb_000977_270--Hb_001484_080 Hb_003752_060 Hb_003752_060 Hb_000977_270--Hb_003752_060 Hb_000023_210--Hb_000402_170 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_007002_010 Hb_007002_010 Hb_000023_210--Hb_007002_010 Hb_011053_020 Hb_011053_020 Hb_000023_210--Hb_011053_020 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_007044_250--Hb_003106_170 Hb_007044_250--Hb_001484_080 Hb_007044_250--Hb_003752_060 Hb_007044_250--Hb_036790_120 Hb_000402_170--Hb_003427_080 Hb_000402_170--Hb_036790_120 Hb_000402_170--Hb_000300_020 Hb_001723_030 Hb_001723_030 Hb_000402_170--Hb_001723_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67098 4.71153 62.6619 36.6019 6.14998 12.1021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1411 15.9519 14.5775 9.20488 177.96

CAGE analysis