Hb_001484_080

Information

Type -
Description -
Location Contig1484: 149049-153153
Sequence    

Annotation

kegg
ID rcu:RCOM_0038360
description 2-deoxyglucose-6-phosphate phosphatase, putative
nr
ID XP_002532876.1
description 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
swissprot
ID Q680K2
description Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana GN=At4g39970 PE=2 SV=1
trembl
ID B9T3Q7
description 2-deoxyglucose-6-phosphate phosphatase, putative OS=Ricinus communis GN=RCOM_0038360 PE=4 SV=1
Gene Ontology
ID GO:0009570
description haloacid dehalogenase-like hydrolase domain-containing protein at4g39970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12203: 149131-153088 , PASA_asmbl_12204: 152758-153327 , PASA_asmbl_12205: 150469-150713
cDNA
(Sanger)
(ID:Location)		 008_H21.ab1: 149131-152100 , 018_B04.ab1: 149131-152305 , 052_K16.ab1: 149131-152589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001484_080 0.0 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
2 Hb_007044_250 0.0919015937 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000977_270 0.1022787666 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
4 Hb_003106_170 0.1050827789 - - Endonuclease III, putative [Ricinus communis]
5 Hb_114861_010 0.107566401 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
6 Hb_001792_030 0.1157686939 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
7 Hb_003752_060 0.1279474219 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
8 Hb_000189_520 0.128014488 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_000754_050 0.1310413453 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_000062_520 0.1327470449 - - conserved hypothetical protein [Ricinus communis]
11 Hb_036790_120 0.1350083278 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
12 Hb_005588_110 0.1431121865 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
13 Hb_000012_010 0.1440522302 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
14 Hb_002304_180 0.1518463075 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
15 Hb_001889_010 0.1520381281 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
16 Hb_002534_030 0.1524848237 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_002078_300 0.1556380722 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
18 Hb_001621_060 0.1604854075 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
19 Hb_000667_140 0.1621563173 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
20 Hb_000402_170 0.164091331 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001484_080 Hb_001484_080 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_007044_250--Hb_000977_270 Hb_007044_250--Hb_003106_170 Hb_007044_250--Hb_003752_060 Hb_002304_180 Hb_002304_180 Hb_007044_250--Hb_002304_180 Hb_036790_120 Hb_036790_120 Hb_007044_250--Hb_036790_120 Hb_000977_270--Hb_003106_170 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_002304_180 Hb_000977_270--Hb_003752_060 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_114861_010--Hb_001792_030 Hb_114861_010--Hb_007044_250 Hb_000189_520 Hb_000189_520 Hb_114861_010--Hb_000189_520 Hb_005489_090 Hb_005489_090 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230 Hb_001792_030--Hb_000189_520 Hb_001621_060 Hb_001621_060 Hb_001792_030--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_001792_030--Hb_003935_080 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_003752_060--Hb_003106_170 Hb_003752_060--Hb_114861_010 Hb_003752_060--Hb_036790_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85206 0.899229 9.40622 2.97629 1.24927 1.64657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95876 6.26008 4.48107 2.86446 38.5445

CAGE analysis