Hb_114861_010

Information

Type -
Description -
Location Contig114861: 8565-11351
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30840g
description POPTRDRAFT_815682; STRESS ENHANCED protein 1
nr
ID XP_002300234.1
description STRESS ENHANCED protein 1 [Populus trichocarpa]
swissprot
ID Q9M7I9
description Stress enhanced protein 1, chloroplastic OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1
trembl
ID A9PFE3
description STRESS ENHANCED protein 1 OS=Populus trichocarpa GN=POPTR_0001s30840g PE=2 SV=1
Gene Ontology
ID GO:0016168
description stress enhanced protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04490: 8624-11350
cDNA
(Sanger)
(ID:Location)		 020_C18.ab1: 8629-11350 , 024_K24.ab1: 8624-11350

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114861_010 0.0 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
2 Hb_001484_080 0.107566401 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
3 Hb_001792_030 0.1160560705 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
4 Hb_007044_250 0.116394643 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000189_520 0.1208351819 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
6 Hb_005489_090 0.1240093101 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
7 Hb_000110_230 0.1282229621 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
8 Hb_002078_300 0.1360933479 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
9 Hb_003935_080 0.1361029197 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
10 Hb_000627_300 0.1361739894 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
11 Hb_001889_010 0.1373429442 transcription factor TF Family: Orphans PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2 [Jatropha curcas]
12 Hb_003752_060 0.1414536282 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
13 Hb_000977_270 0.1436389499 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
14 Hb_005725_220 0.1466592763 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
15 Hb_001124_180 0.1504543616 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
16 Hb_001621_060 0.1509795695 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
17 Hb_036790_120 0.1519929531 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
18 Hb_000152_480 0.1544371398 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
19 Hb_003106_170 0.1559514813 - - Endonuclease III, putative [Ricinus communis]
20 Hb_000164_140 0.1576372652 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_114861_010 Hb_114861_010 Hb_001484_080 Hb_001484_080 Hb_114861_010--Hb_001484_080 Hb_001792_030 Hb_001792_030 Hb_114861_010--Hb_001792_030 Hb_007044_250 Hb_007044_250 Hb_114861_010--Hb_007044_250 Hb_000189_520 Hb_000189_520 Hb_114861_010--Hb_000189_520 Hb_005489_090 Hb_005489_090 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_001792_030--Hb_000189_520 Hb_001621_060 Hb_001621_060 Hb_001792_030--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_001792_030--Hb_003935_080 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_007044_250--Hb_000977_270 Hb_007044_250--Hb_003106_170 Hb_007044_250--Hb_003752_060 Hb_002304_180 Hb_002304_180 Hb_007044_250--Hb_002304_180 Hb_036790_120 Hb_036790_120 Hb_007044_250--Hb_036790_120 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_001621_060 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_001124_180 Hb_001124_180 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_000110_230--Hb_000164_140 Hb_000110_230--Hb_005725_220 Hb_029920_030 Hb_029920_030 Hb_000110_230--Hb_029920_030 Hb_000042_290 Hb_000042_290 Hb_000110_230--Hb_000042_290 Hb_005276_010 Hb_005276_010 Hb_000110_230--Hb_005276_010 Hb_000110_230--Hb_036790_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91564 8.63779 54.2781 21.4805 3.91261 4.59746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1147 39.137 20.3238 11.9467 150.574

CAGE analysis