Hb_003752_060

Information

Type -
Description -
Location Contig3752: 72293-82947
Sequence    

Annotation

kegg
ID rcu:RCOM_1627880
description hydrolase, putative (EC:3.8.1.5)
nr
ID XP_012084566.1
description PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
swissprot
ID Q9SUI4
description Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2
trembl
ID A0A067L9V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15076 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized hydrolase ynr064c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38317: 72274-77423 , PASA_asmbl_38318: 72306-77236 , PASA_asmbl_38319: 82487-82765 , PASA_asmbl_38320: 81873-82755
cDNA
(Sanger)
(ID:Location)		 042_N02.ab1: 73931-77423

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_060 0.0 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
2 Hb_007044_250 0.0952339669 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000977_270 0.1055872188 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
4 Hb_001484_080 0.1279474219 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
5 Hb_003106_170 0.1336666096 - - Endonuclease III, putative [Ricinus communis]
6 Hb_114861_010 0.1414536282 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
7 Hb_036790_120 0.1640317159 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
8 Hb_001792_030 0.1658537568 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
9 Hb_007694_060 0.1671012174 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
10 Hb_000012_010 0.1700784534 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
11 Hb_007426_170 0.1712647858 transcription factor TF Family: TCP -
12 Hb_002304_180 0.1721599151 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
13 Hb_002078_300 0.1743132945 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
14 Hb_005489_090 0.1796371102 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
15 Hb_000110_230 0.179766227 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_005725_220 0.1831005261 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
17 Hb_000189_520 0.1840727324 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
18 Hb_000152_480 0.1859446956 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
19 Hb_005563_040 0.188919421 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
20 Hb_003935_080 0.1905302898 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003752_060 Hb_003752_060 Hb_007044_250 Hb_007044_250 Hb_003752_060--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_003752_060--Hb_000977_270 Hb_001484_080 Hb_001484_080 Hb_003752_060--Hb_001484_080 Hb_003106_170 Hb_003106_170 Hb_003752_060--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_003752_060--Hb_114861_010 Hb_036790_120 Hb_036790_120 Hb_003752_060--Hb_036790_120 Hb_007044_250--Hb_000977_270 Hb_007044_250--Hb_003106_170 Hb_007044_250--Hb_001484_080 Hb_002304_180 Hb_002304_180 Hb_007044_250--Hb_002304_180 Hb_007044_250--Hb_036790_120 Hb_000977_270--Hb_003106_170 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_001484_080 Hb_000977_270--Hb_002304_180 Hb_001484_080--Hb_003106_170 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_114861_010--Hb_001792_030 Hb_114861_010--Hb_007044_250 Hb_000189_520 Hb_000189_520 Hb_114861_010--Hb_000189_520 Hb_005489_090 Hb_005489_090 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01724 0.857355 16.9018 4.18481 0.936743 1.85902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.31773 8.26018 8.84381 1.43501 40.7501

CAGE analysis