Hb_000684_280

Information

Type -
Description -
Location Contig684: 289281-291536
Sequence    

Annotation

kegg
ID rcu:RCOM_0819640
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082283.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
swissprot
ID Q9SF38
description Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1
trembl
ID A0A067JYM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16460 PE=4 SV=1
Gene Ontology
ID GO:0009570
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
2 Hb_003941_030 0.0681347784 - - Protease ecfE, putative [Ricinus communis]
3 Hb_000661_090 0.0927937354 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_036790_120 0.101580862 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
5 Hb_000537_070 0.1076385746 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
6 Hb_011053_030 0.1082974583 - - -
7 Hb_000189_250 0.1148397283 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
8 Hb_000934_020 0.1197519626 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
9 Hb_000023_210 0.1209631063 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
10 Hb_000318_130 0.1218568984 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_005147_080 0.1253340986 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000032_400 0.1264786639 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
13 Hb_007576_150 0.1267100935 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
14 Hb_000495_080 0.1284208651 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
15 Hb_002671_130 0.1289682037 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
16 Hb_000548_060 0.1305456513 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
17 Hb_001723_030 0.1306004032 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
18 Hb_000816_200 0.1312399575 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_003777_020 0.1328837534 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
20 Hb_003124_120 0.1338757394 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]

Gene co-expression network

sample Hb_000684_280 Hb_000684_280 Hb_003941_030 Hb_003941_030 Hb_000684_280--Hb_003941_030 Hb_000661_090 Hb_000661_090 Hb_000684_280--Hb_000661_090 Hb_036790_120 Hb_036790_120 Hb_000684_280--Hb_036790_120 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_011053_030 Hb_011053_030 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250 Hb_000318_130 Hb_000318_130 Hb_003941_030--Hb_000318_130 Hb_000032_400 Hb_000032_400 Hb_003941_030--Hb_000032_400 Hb_003941_030--Hb_000661_090 Hb_002078_300 Hb_002078_300 Hb_003941_030--Hb_002078_300 Hb_004375_050 Hb_004375_050 Hb_003941_030--Hb_004375_050 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_003777_020 Hb_003777_020 Hb_000661_090--Hb_003777_020 Hb_016461_030 Hb_016461_030 Hb_000661_090--Hb_016461_030 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_000661_090--Hb_000537_070 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_000548_060 Hb_000548_060 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_036790_120--Hb_000189_250 Hb_010128_020 Hb_010128_020 Hb_036790_120--Hb_010128_020 Hb_002928_030 Hb_002928_030 Hb_000537_070--Hb_002928_030 Hb_000684_430 Hb_000684_430 Hb_000537_070--Hb_000684_430 Hb_006062_030 Hb_006062_030 Hb_000537_070--Hb_006062_030 Hb_001269_500 Hb_001269_500 Hb_000537_070--Hb_001269_500 Hb_001723_030 Hb_001723_030 Hb_000537_070--Hb_001723_030 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000934_020 Hb_000934_020 Hb_000189_250--Hb_000934_020 Hb_166127_030 Hb_166127_030 Hb_000189_250--Hb_166127_030 Hb_000640_260 Hb_000640_260 Hb_000189_250--Hb_000640_260 Hb_007576_150 Hb_007576_150 Hb_000189_250--Hb_007576_150 Hb_000495_080 Hb_000495_080 Hb_000189_250--Hb_000495_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.00111 7.63537 16.3001 12.4175 4.04991 5.60751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9208 7.61959 8.90281 3.50403 51.0407

CAGE analysis