Hb_000537_070

Information

Type -
Description -
Location Contig537: 150151-155329
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00800g
description POPTRDRAFT_260797; hypothetical protein
nr
ID XP_012077451.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
swissprot
ID Q8GZ63
description Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
trembl
ID A0A067KR04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07785 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g25630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47596: 151618-152901 , PASA_asmbl_47597: 151644-155254 , PASA_asmbl_47599: 155031-156776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
2 Hb_002928_030 0.0927651412 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
3 Hb_000661_090 0.0964121252 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_000684_430 0.0972587704 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
5 Hb_006062_030 0.0976310874 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
6 Hb_001269_500 0.102373224 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
7 Hb_001723_030 0.1026618974 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
8 Hb_000684_280 0.1076385746 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
9 Hb_014361_110 0.1078746046 - - RNA binding protein, putative [Ricinus communis]
10 Hb_001649_030 0.1082836142 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
11 Hb_002005_040 0.1120512413 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_010344_020 0.1132554547 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
13 Hb_000358_040 0.1137001573 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
14 Hb_011861_050 0.1156787492 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
15 Hb_000762_110 0.116378531 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
16 Hb_000579_040 0.1168511818 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
17 Hb_001250_020 0.1172749876 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
18 Hb_189003_060 0.1196613809 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000260_710 0.1209244652 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
20 Hb_004055_160 0.1210178106 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000537_070 Hb_000537_070 Hb_002928_030 Hb_002928_030 Hb_000537_070--Hb_002928_030 Hb_000661_090 Hb_000661_090 Hb_000537_070--Hb_000661_090 Hb_000684_430 Hb_000684_430 Hb_000537_070--Hb_000684_430 Hb_006062_030 Hb_006062_030 Hb_000537_070--Hb_006062_030 Hb_001269_500 Hb_001269_500 Hb_000537_070--Hb_001269_500 Hb_001723_030 Hb_001723_030 Hb_000537_070--Hb_001723_030 Hb_001649_030 Hb_001649_030 Hb_002928_030--Hb_001649_030 Hb_000358_040 Hb_000358_040 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_003376_390 Hb_003376_390 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_003777_020 Hb_003777_020 Hb_000661_090--Hb_003777_020 Hb_016461_030 Hb_016461_030 Hb_000661_090--Hb_016461_030 Hb_000684_280 Hb_000684_280 Hb_000661_090--Hb_000684_280 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_001959_060 Hb_001959_060 Hb_000684_430--Hb_001959_060 Hb_004055_160 Hb_004055_160 Hb_000684_430--Hb_004055_160 Hb_002217_140 Hb_002217_140 Hb_000684_430--Hb_002217_140 Hb_006829_080 Hb_006829_080 Hb_000684_430--Hb_006829_080 Hb_148146_010 Hb_148146_010 Hb_000684_430--Hb_148146_010 Hb_002005_040 Hb_002005_040 Hb_000684_430--Hb_002005_040 Hb_006062_030--Hb_000661_090 Hb_000053_120 Hb_000053_120 Hb_006062_030--Hb_000053_120 Hb_006062_030--Hb_001723_030 Hb_005618_150 Hb_005618_150 Hb_006062_030--Hb_005618_150 Hb_006062_030--Hb_003777_020 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_001723_030--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13268 8.21252 22.2369 11.794 3.7698 5.2991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19859 4.01542 5.81093 4.76234 42.412

CAGE analysis