Hb_000053_120

Information

Type -
Description -
Location Contig53: 196509-203219
Sequence    

Annotation

kegg
ID rcu:RCOM_0704660
description hypothetical protein
nr
ID XP_012082017.1
description PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID A0A067KC04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18275 PE=4 SV=1
Gene Ontology
ID GO:0005623
description hydroxyproline-rich glycoprotein family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47297: 196474-203101 , PASA_asmbl_47298: 198175-200804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_120 0.0 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
2 Hb_003427_080 0.0869974238 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
3 Hb_006062_030 0.1092642747 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
4 Hb_024714_080 0.1348171165 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
5 Hb_003077_130 0.1353006078 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
6 Hb_000069_490 0.139003205 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000402_170 0.141456576 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
8 Hb_001723_030 0.1431255808 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
9 Hb_000395_090 0.1431950783 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
10 Hb_028707_110 0.1435149732 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
11 Hb_003878_080 0.1436836757 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
12 Hb_000934_020 0.1455252203 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
13 Hb_000661_090 0.1464518345 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_000684_280 0.14713423 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
15 Hb_005618_150 0.1473180486 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
16 Hb_002740_190 0.1496985981 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
17 Hb_003777_020 0.1548617998 - - Fructose-1,6-bisphosphatase, cytosolic, putative [Ricinus communis]
18 Hb_072212_010 0.1560681391 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
19 Hb_036790_120 0.1590056897 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
20 Hb_166127_030 0.1592244672 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000053_120 Hb_000053_120 Hb_003427_080 Hb_003427_080 Hb_000053_120--Hb_003427_080 Hb_006062_030 Hb_006062_030 Hb_000053_120--Hb_006062_030 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000402_170 Hb_000402_170 Hb_000053_120--Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030 Hb_000537_070 Hb_000537_070 Hb_006062_030--Hb_000537_070 Hb_000661_090 Hb_000661_090 Hb_006062_030--Hb_000661_090 Hb_001723_030 Hb_001723_030 Hb_006062_030--Hb_001723_030 Hb_005618_150 Hb_005618_150 Hb_006062_030--Hb_005618_150 Hb_003777_020 Hb_003777_020 Hb_006062_030--Hb_003777_020 Hb_024714_080--Hb_003077_130 Hb_024714_080--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_024714_080--Hb_028707_110 Hb_000997_140 Hb_000997_140 Hb_024714_080--Hb_000997_140 Hb_003077_130--Hb_000069_490 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_000069_490--Hb_003878_080 Hb_000069_490--Hb_028707_110 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_036790_120 Hb_036790_120 Hb_000402_170--Hb_036790_120 Hb_000023_210 Hb_000023_210 Hb_000402_170--Hb_000023_210 Hb_000300_020 Hb_000300_020 Hb_000402_170--Hb_000300_020 Hb_000402_170--Hb_001723_030 Hb_002304_180 Hb_002304_180 Hb_000402_170--Hb_002304_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6351 19.0222 47.6067 21.5832 22.307 27.7825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8583 7.78326 17.5139 6.67128 177.604

CAGE analysis