Hb_003941_030

Information

Type -
Description -
Location Contig3941: 36654-37787
Sequence    

Annotation

kegg
ID rcu:RCOM_0857100
description Protease ecfE, putative
nr
ID XP_002529666.1
description Protease ecfE, putative [Ricinus communis]
swissprot
ID O80885
description Membrane metalloprotease ARASP, chloroplastic OS=Arabidopsis thaliana GN=ARASP PE=2 SV=1
trembl
ID B9SUJ7
description Protease ecfE, putative OS=Ricinus communis GN=RCOM_0857100 PE=4 SV=1
Gene Ontology
ID GO:0004222
description zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003941_030 0.0 - - Protease ecfE, putative [Ricinus communis]
2 Hb_000684_280 0.0681347784 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
3 Hb_000318_130 0.0998487919 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000032_400 0.1054745363 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_000661_090 0.1134922577 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
6 Hb_002078_300 0.1148558681 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
7 Hb_004375_050 0.115693417 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000114_150 0.1172359474 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_011053_030 0.1192453921 - - -
10 Hb_002290_030 0.1247712771 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
11 Hb_000495_080 0.1276720057 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
12 Hb_001629_090 0.1306649367 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005305_020 0.1312448096 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
14 Hb_007576_150 0.1335938312 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
15 Hb_003494_130 0.1336457895 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
16 Hb_000189_520 0.1339973468 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
17 Hb_000983_070 0.1345678756 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000816_200 0.1351946663 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
19 Hb_003124_120 0.1365729418 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
20 Hb_005147_080 0.1379233004 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003941_030 Hb_003941_030 Hb_000684_280 Hb_000684_280 Hb_003941_030--Hb_000684_280 Hb_000318_130 Hb_000318_130 Hb_003941_030--Hb_000318_130 Hb_000032_400 Hb_000032_400 Hb_003941_030--Hb_000032_400 Hb_000661_090 Hb_000661_090 Hb_003941_030--Hb_000661_090 Hb_002078_300 Hb_002078_300 Hb_003941_030--Hb_002078_300 Hb_004375_050 Hb_004375_050 Hb_003941_030--Hb_004375_050 Hb_000684_280--Hb_000661_090 Hb_036790_120 Hb_036790_120 Hb_000684_280--Hb_036790_120 Hb_000537_070 Hb_000537_070 Hb_000684_280--Hb_000537_070 Hb_011053_030 Hb_011053_030 Hb_000684_280--Hb_011053_030 Hb_000189_250 Hb_000189_250 Hb_000684_280--Hb_000189_250 Hb_000318_130--Hb_004375_050 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_005147_080 Hb_005147_080 Hb_000318_130--Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_000318_130--Hb_002290_030 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_002671_130 Hb_002671_130 Hb_000661_090--Hb_002671_130 Hb_003777_020 Hb_003777_020 Hb_000661_090--Hb_003777_020 Hb_016461_030 Hb_016461_030 Hb_000661_090--Hb_016461_030 Hb_002282_070 Hb_002282_070 Hb_000661_090--Hb_002282_070 Hb_000661_090--Hb_000537_070 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_004109_160 Hb_004109_160 Hb_002078_300--Hb_004109_160 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_001792_030 Hb_001792_030 Hb_002078_300--Hb_001792_030 Hb_004375_050--Hb_002290_030 Hb_001629_090 Hb_001629_090 Hb_004375_050--Hb_001629_090 Hb_004375_050--Hb_005147_080 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83252 10.2961 15.3602 15.3705 3.81503 5.13115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77368 10.7262 13.3047 4.31522 53.905

CAGE analysis