Hb_000189_520

Information

Type -
Description -
Location Contig189: 412763-417158
Sequence    

Annotation

kegg
ID rcu:RCOM_1428510
description hypothetical protein
nr
ID XP_012089215.1
description PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23463 PE=4 SV=1
Gene Ontology
ID GO:0009507
description myelin-associated oligodendrocyte basic protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18705: 412772-416697 , PASA_asmbl_18707: 417773-418134
cDNA
(Sanger)
(ID:Location)		 041_H15r.ab1: 417630-420275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_520 0.0 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
2 Hb_001792_030 0.0771550119 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
3 Hb_000866_050 0.0935001879 - - phosphate transporter [Manihot esculenta]
4 Hb_000032_400 0.1004562375 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_001621_060 0.1055989455 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
6 Hb_003935_080 0.1121973203 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
7 Hb_011053_030 0.114229999 - - -
8 Hb_002078_300 0.1151287108 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
9 Hb_114861_010 0.1208351819 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
10 Hb_036790_120 0.121577147 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
11 Hb_000012_010 0.1272043553 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
12 Hb_001484_080 0.128014488 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
13 Hb_005489_090 0.1302600425 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
14 Hb_011053_020 0.1306555933 - - lipoic acid synthetase, putative [Ricinus communis]
15 Hb_000058_080 0.1320901583 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000352_220 0.1325180454 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_000189_250 0.1327542277 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
18 Hb_003941_030 0.1339973468 - - Protease ecfE, putative [Ricinus communis]
19 Hb_026314_030 0.1351929041 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
20 Hb_007044_250 0.1364460603 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000189_520 Hb_000189_520 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_001792_030--Hb_001621_060 Hb_001792_030--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_001792_030--Hb_005489_090 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_000594_100 Hb_000594_100 Hb_001792_030--Hb_000594_100 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_011053_030 Hb_183963_010 Hb_183963_010 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_000032_400--Hb_011053_030 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_001621_060--Hb_003935_080 Hb_003935_080--Hb_005489_090 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_011053_030--Hb_000175_050 Hb_011053_030--Hb_026314_030 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.85984 12.3039 38.8156 32.4453 5.63209 6.89225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9827 24.3278 24.3721 18.5496 155.579

CAGE analysis