Hb_011053_030

Information

Type -
Description -
Location Contig11053: 24193-24459
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 044_D20r.ab1: 21797-24138

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011053_030 0.0 - - -
2 Hb_000834_080 0.0706289444 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
3 Hb_000175_050 0.0887926246 - - -
4 Hb_000032_400 0.0897750365 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_026314_030 0.0917511746 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_000866_050 0.1056872645 - - phosphate transporter [Manihot esculenta]
7 Hb_126917_010 0.1077904413 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
8 Hb_000684_280 0.1082974583 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Jatropha curcas]
9 Hb_000189_520 0.114229999 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
10 Hb_003941_030 0.1192453921 - - Protease ecfE, putative [Ricinus communis]
11 Hb_001628_120 0.1223917519 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
12 Hb_000975_050 0.1229182625 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
13 Hb_183963_010 0.1239449478 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
14 Hb_000152_480 0.1241668269 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
15 Hb_004672_020 0.1241830404 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
16 Hb_000023_210 0.1248908826 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
17 Hb_001343_020 0.1259647306 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000032_390 0.1279417278 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
19 Hb_001269_500 0.1288462621 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
20 Hb_005305_020 0.129166411 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011053_030 Hb_011053_030 Hb_000834_080 Hb_000834_080 Hb_011053_030--Hb_000834_080 Hb_000175_050 Hb_000175_050 Hb_011053_030--Hb_000175_050 Hb_000032_400 Hb_000032_400 Hb_011053_030--Hb_000032_400 Hb_026314_030 Hb_026314_030 Hb_011053_030--Hb_026314_030 Hb_000866_050 Hb_000866_050 Hb_011053_030--Hb_000866_050 Hb_126917_010 Hb_126917_010 Hb_011053_030--Hb_126917_010 Hb_000834_080--Hb_126917_010 Hb_001628_120 Hb_001628_120 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000975_050 Hb_000975_050 Hb_000834_080--Hb_000975_050 Hb_000834_080--Hb_000175_050 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000032_400--Hb_000175_050 Hb_026314_030--Hb_000866_050 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_000189_520 Hb_003935_080 Hb_003935_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_003171_030 Hb_003171_030 Hb_126917_010--Hb_003171_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0043 49.7624 122.977 113.572 15.6366 17.9543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4159 48.6694 46.8988 32.6119 326.349

CAGE analysis