Hb_000975_050

Information

Type -
Description -
Location Contig975: 23719-28728
Sequence    

Annotation

kegg
ID vvi:100260431
description inner membrane protein PPF-1, chloroplastic
nr
ID XP_012065013.1
description PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FY06
description Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2
trembl
ID A0A067LJ12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05686 PE=3 SV=1
Gene Ontology
ID GO:0009534
description inner membrane protein ppf- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63993: 23758-25574 , PASA_asmbl_63994: 27682-40294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_050 0.0 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
2 Hb_000966_040 0.0688616625 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
3 Hb_010098_040 0.1061787459 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_000834_080 0.1111375687 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
5 Hb_000441_050 0.1120193079 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
6 Hb_005181_120 0.1128157939 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_005977_060 0.1137465598 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_680 0.1178323684 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
9 Hb_000193_220 0.122718152 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
10 Hb_011053_030 0.1229182625 - - -
11 Hb_021409_190 0.1246184555 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
12 Hb_001266_160 0.1249888244 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_000032_390 0.1266732266 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
14 Hb_031330_020 0.1268144845 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_004712_200 0.1275015077 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
16 Hb_000163_110 0.1288004491 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
17 Hb_000803_170 0.1289929422 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
18 Hb_007982_040 0.1293724769 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
19 Hb_000516_080 0.1293815841 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
20 Hb_002811_250 0.129762973 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000975_050 Hb_000975_050 Hb_000966_040 Hb_000966_040 Hb_000975_050--Hb_000966_040 Hb_010098_040 Hb_010098_040 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_011053_030 Hb_011053_030 Hb_000834_080--Hb_011053_030 Hb_126917_010 Hb_126917_010 Hb_000834_080--Hb_126917_010 Hb_001628_120 Hb_001628_120 Hb_000834_080--Hb_001628_120 Hb_012799_190 Hb_012799_190 Hb_000834_080--Hb_012799_190 Hb_000175_050 Hb_000175_050 Hb_000834_080--Hb_000175_050 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60251 3.89231 12.3617 10.4183 1.30418 1.16642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25703 2.119 2.8522 4.63211 35.7424

CAGE analysis