Hb_005846_030

Information

Type -
Description -
Location Contig5846: 36185-39882
Sequence    

Annotation

kegg
ID rcu:RCOM_0178160
description 50S ribosomal protein L29, chloroplast precursor, putative
nr
ID XP_012088523.1
description PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
swissprot
ID Q9FJP3
description 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1
trembl
ID A0A067LED0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24030 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49954: 36194-39753 , PASA_asmbl_49955: 38268-38645
cDNA
(Sanger)
(ID:Location)		 011_M08.ab1: 36205-39728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005846_030 0.0 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
2 Hb_007632_170 0.0849600033 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
3 Hb_005725_220 0.0879343004 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
4 Hb_001712_020 0.0944187945 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
5 Hb_000164_140 0.0955897538 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_000638_160 0.0956103475 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
7 Hb_000167_050 0.111748696 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
8 Hb_001124_180 0.1125562754 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
9 Hb_002078_300 0.1126574975 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
10 Hb_014834_130 0.113454121 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
11 Hb_004128_070 0.1191309398 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
12 Hb_001898_180 0.1203006741 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
13 Hb_000622_240 0.1211898223 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
14 Hb_000510_030 0.1215658339 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
15 Hb_000627_300 0.1233270265 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
16 Hb_000723_290 0.1243222536 - - calcium lipid binding protein, putative [Ricinus communis]
17 Hb_001790_030 0.1261533331 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
18 Hb_010577_040 0.1274476597 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
19 Hb_005489_090 0.1282837413 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
20 Hb_007534_050 0.1297268539 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005846_030 Hb_005846_030 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000638_160 Hb_000638_160 Hb_005846_030--Hb_000638_160 Hb_000167_050 Hb_000167_050 Hb_005846_030--Hb_000167_050 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_019040_030 Hb_019040_030 Hb_007632_170--Hb_019040_030 Hb_000156_210 Hb_000156_210 Hb_007632_170--Hb_000156_210 Hb_002078_300 Hb_002078_300 Hb_007632_170--Hb_002078_300 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_000877_080 Hb_000877_080 Hb_001712_020--Hb_000877_080 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_005276_010 Hb_005276_010 Hb_000164_140--Hb_005276_010 Hb_000164_140--Hb_002078_300 Hb_000164_140--Hb_029920_030 Hb_000028_110 Hb_000028_110 Hb_000164_140--Hb_000028_110 Hb_000638_160--Hb_000167_050 Hb_000638_160--Hb_014834_130 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_000176_010 Hb_000176_010 Hb_000167_050--Hb_000176_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6931 7.346 41.8751 34.1868 8.89644 11.5936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3469 52.7818 28.1194 14.7695 98.9618

CAGE analysis