Hb_000394_180

Information

Type -
Description -
Location Contig394: 159046-163392
Sequence    

Annotation

kegg
ID pop:POPTR_0019s11030g
description POPTRDRAFT_249615; hypothetical protein
nr
ID XP_012075787.1
description PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
swissprot
ID Q5P316
description 50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1
trembl
ID B9IQG4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11030g PE=4 SV=2
Gene Ontology
ID GO:0005840
description ribosomal l18p l5e family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39463: 158971-163340
cDNA
(Sanger)
(ID:Location)		 005_N04.ab1: 159066-163340 , 053_E15.ab1: 159123-163340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000394_180 0.0 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
2 Hb_004951_060 0.0685599512 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
3 Hb_007192_030 0.0697928612 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
4 Hb_001369_790 0.0817787806 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
5 Hb_001301_340 0.0951157629 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
6 Hb_006846_150 0.0951224887 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004257_010 0.0984825394 - - CMP-sialic acid transporter, putative [Ricinus communis]
8 Hb_004965_110 0.0999761445 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
9 Hb_000317_260 0.1007393301 - - unknown [Populus trichocarpa]
10 Hb_000086_080 0.1013587368 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000167_050 0.1047880315 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
12 Hb_003266_030 0.1053845719 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
13 Hb_000365_130 0.1080250806 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
14 Hb_003411_090 0.1081109301 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_001277_100 0.1084495176 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
16 Hb_000392_550 0.1094981198 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005167_010 0.1098694264 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
18 Hb_000811_070 0.1107078554 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
19 Hb_008147_090 0.1123226591 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000622_290 0.1123336219 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]

Gene co-expression network

sample Hb_000394_180 Hb_000394_180 Hb_004951_060 Hb_004951_060 Hb_000394_180--Hb_004951_060 Hb_007192_030 Hb_007192_030 Hb_000394_180--Hb_007192_030 Hb_001369_790 Hb_001369_790 Hb_000394_180--Hb_001369_790 Hb_001301_340 Hb_001301_340 Hb_000394_180--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_000394_180--Hb_006846_150 Hb_004257_010 Hb_004257_010 Hb_000394_180--Hb_004257_010 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_001662_130 Hb_001662_130 Hb_004951_060--Hb_001662_130 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_004951_060--Hb_006846_150 Hb_007192_030--Hb_001369_790 Hb_000086_080 Hb_000086_080 Hb_007192_030--Hb_000086_080 Hb_000622_290 Hb_000622_290 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004440_060 Hb_004440_060 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_001369_790--Hb_000622_290 Hb_000035_240 Hb_000035_240 Hb_001301_340--Hb_000035_240 Hb_007894_050 Hb_007894_050 Hb_001301_340--Hb_007894_050 Hb_001301_340--Hb_000317_260 Hb_001301_340--Hb_001369_790 Hb_001301_340--Hb_000392_550 Hb_000811_070 Hb_000811_070 Hb_006846_150--Hb_000811_070 Hb_011689_120 Hb_011689_120 Hb_006846_150--Hb_011689_120 Hb_000403_070 Hb_000403_070 Hb_006846_150--Hb_000403_070 Hb_000487_260 Hb_000487_260 Hb_006846_150--Hb_000487_260 Hb_012799_170 Hb_012799_170 Hb_006846_150--Hb_012799_170 Hb_000329_210 Hb_000329_210 Hb_004257_010--Hb_000329_210 Hb_002392_010 Hb_002392_010 Hb_004257_010--Hb_002392_010 Hb_002184_090 Hb_002184_090 Hb_004257_010--Hb_002184_090 Hb_001195_060 Hb_001195_060 Hb_004257_010--Hb_001195_060 Hb_005167_010 Hb_005167_010 Hb_004257_010--Hb_005167_010 Hb_001892_070 Hb_001892_070 Hb_004257_010--Hb_001892_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5743 5.96721 24.9679 26.9785 5.09485 9.54555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.412 27.654 15.2955 9.21887 31.3828

CAGE analysis