Hb_000352_220

Information

Type -
Description -
Location Contig352: 206135-207652
Sequence    

Annotation

kegg
ID rcu:RCOM_1443770
description tyrosyl-tRNA synthetase, putative (EC:6.1.1.1)
nr
ID XP_012067411.1
description PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q6MC06
description Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1
trembl
ID A0A067L0B5
description Tyrosine--tRNA ligase OS=Jatropha curcas GN=JCGZ_26914 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable tyrosine--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36585: 208487-210766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_220 0.0 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_000495_080 0.0728063772 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
3 Hb_007002_010 0.0821632581 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
4 Hb_003226_190 0.0876065087 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
5 Hb_000300_020 0.0993910814 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
6 Hb_002671_130 0.1145175624 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
7 Hb_000114_150 0.1152316151 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
8 Hb_003124_120 0.1157423296 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
9 Hb_001009_260 0.117236004 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
10 Hb_021409_190 0.1192877701 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
11 Hb_000189_450 0.1195564741 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000683_080 0.1204471895 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
13 Hb_003142_010 0.1207959532 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
14 Hb_000816_200 0.1212093902 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_016760_010 0.121882864 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000189_250 0.1222802368 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
17 Hb_000866_050 0.1234710639 - - phosphate transporter [Manihot esculenta]
18 Hb_001677_220 0.1255143629 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
19 Hb_000640_260 0.1264925286 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
20 Hb_000661_090 0.1267988523 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000352_220 Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_000352_220--Hb_000495_080 Hb_007002_010 Hb_007002_010 Hb_000352_220--Hb_007002_010 Hb_003226_190 Hb_003226_190 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_000495_080--Hb_003226_190 Hb_008511_140 Hb_008511_140 Hb_000495_080--Hb_008511_140 Hb_000189_250 Hb_000189_250 Hb_000495_080--Hb_000189_250 Hb_000495_080--Hb_007002_010 Hb_000640_260 Hb_000640_260 Hb_000495_080--Hb_000640_260 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_009687_020 Hb_009687_020 Hb_000300_020--Hb_009687_020 Hb_126917_010 Hb_126917_010 Hb_000300_020--Hb_126917_010 Hb_000300_020--Hb_000023_210 Hb_003171_030 Hb_003171_030 Hb_000300_020--Hb_003171_030 Hb_000816_200 Hb_000816_200 Hb_000300_020--Hb_000816_200 Hb_000661_090 Hb_000661_090 Hb_002671_130--Hb_000661_090 Hb_002671_130--Hb_003124_120 Hb_166127_030 Hb_166127_030 Hb_002671_130--Hb_166127_030 Hb_016461_030 Hb_016461_030 Hb_002671_130--Hb_016461_030 Hb_002671_130--Hb_000640_260 Hb_002671_130--Hb_000816_200 Hb_000114_150--Hb_000816_200 Hb_000107_590 Hb_000107_590 Hb_000114_150--Hb_000107_590 Hb_000397_150 Hb_000397_150 Hb_000114_150--Hb_000397_150 Hb_000189_450 Hb_000189_450 Hb_000114_150--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000114_150--Hb_007441_310 Hb_000983_070 Hb_000983_070 Hb_000114_150--Hb_000983_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69795 2.07515 4.18828 6.23824 1.81669 1.98915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31026 2.71422 2.45979 4.17818 21.2534

CAGE analysis