Hb_000890_110

Information

Type -
Description -
Location Contig890: 116005-121146
Sequence    

Annotation

kegg
ID rcu:RCOM_0680350
description Spo0B-associated GTP-binding protein, putative
nr
ID XP_011005537.1
description PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
swissprot
ID Q8L7L0
description GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana GN=OBGL PE=2 SV=1
trembl
ID A0A067J8P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00033 PE=3 SV=1
Gene Ontology
ID GO:0009570
description gtp-binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61601: 116664-120035 , PASA_asmbl_61602: 120413-121025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_110 0.0 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
2 Hb_007002_010 0.0964018907 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
3 Hb_000683_080 0.1209902012 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
4 Hb_158144_020 0.124381527 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
5 Hb_000038_020 0.1280092793 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
6 Hb_000352_220 0.1350592551 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_168031_020 0.1357520661 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
8 Hb_000402_170 0.136224768 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
9 Hb_000495_080 0.1414552298 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
10 Hb_021313_010 0.1434168517 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
11 Hb_000189_250 0.1459609346 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_000667_140 0.1466937364 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
13 Hb_000699_080 0.1486775777 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
14 Hb_003427_080 0.1502878861 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
15 Hb_000189_520 0.1504436397 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
16 Hb_011053_020 0.15185385 - - lipoic acid synthetase, putative [Ricinus communis]
17 Hb_000012_010 0.1521731366 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
18 Hb_002534_030 0.1527844502 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
19 Hb_000014_190 0.1528316138 - - Phytoene dehydrogenase, putative [Ricinus communis]
20 Hb_006856_030 0.155209399 - - Uridine kinase-like protein 4 [Glycine soja]

Gene co-expression network

sample Hb_000890_110 Hb_000890_110 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000038_020 Hb_000038_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_168031_020 Hb_168031_020 Hb_000890_110--Hb_168031_020 Hb_007002_010--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_007002_010--Hb_000683_080 Hb_000023_210 Hb_000023_210 Hb_007002_010--Hb_000023_210 Hb_011053_020 Hb_011053_020 Hb_007002_010--Hb_011053_020 Hb_000683_080--Hb_000495_080 Hb_000683_080--Hb_000352_220 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_000058_080 Hb_000058_080 Hb_158144_020--Hb_000058_080 Hb_000189_250 Hb_000189_250 Hb_158144_020--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_158144_020--Hb_000640_260 Hb_000402_170 Hb_000402_170 Hb_158144_020--Hb_000402_170 Hb_166127_030 Hb_166127_030 Hb_158144_020--Hb_166127_030 Hb_000667_140 Hb_000667_140 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370 Hb_000352_220--Hb_000495_080 Hb_000352_220--Hb_003226_190 Hb_000300_020 Hb_000300_020 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150 Hb_168031_020--Hb_005332_150 Hb_001793_030 Hb_001793_030 Hb_168031_020--Hb_001793_030 Hb_168031_020--Hb_000359_070 Hb_078477_060 Hb_078477_060 Hb_168031_020--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.983629 1.33592 4.23716 4.73146 1.54803 2.78189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9755 2.69925 2.78225 4.77546 35.4177

CAGE analysis