Hb_001229_020

Information

Type -
Description -
Location Contig1229: 17833-26688
Sequence    

Annotation

kegg
ID rcu:RCOM_1691100
description Coiled-coil domain-containing protein, putative
nr
ID XP_002509928.1
description Coiled-coil domain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCP4
description Coiled-coil domain-containing protein, putative OS=Ricinus communis GN=RCOM_1691100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001229_020 0.0 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
2 Hb_000460_070 0.1278716671 - - luminal binding protein [Gossypium hirsutum]
3 Hb_008698_010 0.1311784272 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_003124_110 0.1612691106 - - hypothetical protein VITISV_026680 [Vitis vinifera]
5 Hb_001621_060 0.1732501943 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
6 Hb_002078_300 0.1792513525 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
7 Hb_002534_030 0.18394405 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_000189_520 0.1839677628 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
9 Hb_140459_010 0.1861868072 - - thioredoxin f-type, putative [Ricinus communis]
10 Hb_003941_030 0.2000200343 - - Protease ecfE, putative [Ricinus communis]
11 Hb_020378_060 0.2016328183 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
12 Hb_004128_070 0.2017327933 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
13 Hb_001138_060 0.2048920836 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
14 Hb_001863_020 0.2062646781 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
15 Hb_002875_060 0.2071280907 - - hypothetical protein L484_023461 [Morus notabilis]
16 Hb_000032_400 0.207537266 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
17 Hb_042202_060 0.2079162816 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
18 Hb_001792_030 0.2085771332 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
19 Hb_005344_030 0.2090468219 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
20 Hb_000318_130 0.2093689564 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001229_020 Hb_001229_020 Hb_000460_070 Hb_000460_070 Hb_001229_020--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_001229_020--Hb_008698_010 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001621_060 Hb_001621_060 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030 Hb_000460_070--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_007054_050 Hb_007054_050 Hb_000460_070--Hb_007054_050 Hb_008698_010--Hb_001621_060 Hb_008698_010--Hb_002534_030 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_008698_010--Hb_002078_300 Hb_000500_050 Hb_000500_050 Hb_003124_110--Hb_000500_050 Hb_183612_070 Hb_183612_070 Hb_003124_110--Hb_183612_070 Hb_000032_400 Hb_000032_400 Hb_003124_110--Hb_000032_400 Hb_009150_030 Hb_009150_030 Hb_003124_110--Hb_009150_030 Hb_140459_010 Hb_140459_010 Hb_003124_110--Hb_140459_010 Hb_001621_060--Hb_001792_030 Hb_010577_040 Hb_010577_040 Hb_001621_060--Hb_010577_040 Hb_001621_060--Hb_000189_520 Hb_004109_160 Hb_004109_160 Hb_001621_060--Hb_004109_160 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_002078_300--Hb_004109_160 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030 Hb_005588_110 Hb_005588_110 Hb_002534_030--Hb_005588_110 Hb_067069_010 Hb_067069_010 Hb_002534_030--Hb_067069_010 Hb_002534_030--Hb_002078_300 Hb_001484_080 Hb_001484_080 Hb_002534_030--Hb_001484_080 Hb_000890_110 Hb_000890_110 Hb_002534_030--Hb_000890_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15688 0.419628 0.551748 0.716094 0.116921 0.120514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.97038 1.03783 1.89821 0.335762 4.22305

CAGE analysis