Hb_003124_110

Information

Type -
Description -
Location Contig3124: 37394-43367
Sequence    

Annotation

kegg
ID zma:103632453
description transposon Tf2-1 polyprotein
nr
ID CAN76793.1
description hypothetical protein VITISV_026680 [Vitis vinifera]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A5BEK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transposon tf2-1 polyprotein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33014: 38431-39584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_110 0.0 - - hypothetical protein VITISV_026680 [Vitis vinifera]
2 Hb_000500_050 0.136266177 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
3 Hb_183612_070 0.1399184283 - - unnamed protein product [Vitis vinifera]
4 Hb_000032_400 0.1487204316 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
5 Hb_009150_030 0.150241309 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
6 Hb_001229_020 0.1612691106 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_140459_010 0.1642837107 - - thioredoxin f-type, putative [Ricinus communis]
8 Hb_008698_010 0.1743772438 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_020378_060 0.1763361127 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_000189_520 0.176868791 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
11 Hb_001629_090 0.1775596213 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001214_180 0.1788457555 - - -
13 Hb_003941_030 0.1836904148 - - Protease ecfE, putative [Ricinus communis]
14 Hb_009615_120 0.1846859542 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
15 Hb_001621_060 0.1876669687 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
16 Hb_000983_070 0.1884000463 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005227_040 0.1897515906 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
18 Hb_000140_270 0.190347494 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
19 Hb_002360_030 0.191036556 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
20 Hb_001373_130 0.1910713229 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003124_110 Hb_003124_110 Hb_000500_050 Hb_000500_050 Hb_003124_110--Hb_000500_050 Hb_183612_070 Hb_183612_070 Hb_003124_110--Hb_183612_070 Hb_000032_400 Hb_000032_400 Hb_003124_110--Hb_000032_400 Hb_009150_030 Hb_009150_030 Hb_003124_110--Hb_009150_030 Hb_001229_020 Hb_001229_020 Hb_003124_110--Hb_001229_020 Hb_140459_010 Hb_140459_010 Hb_003124_110--Hb_140459_010 Hb_002783_150 Hb_002783_150 Hb_000500_050--Hb_002783_150 Hb_000191_080 Hb_000191_080 Hb_000500_050--Hb_000191_080 Hb_000500_050--Hb_000032_400 Hb_001373_130 Hb_001373_130 Hb_000500_050--Hb_001373_130 Hb_000140_270 Hb_000140_270 Hb_000500_050--Hb_000140_270 Hb_183612_070--Hb_140459_010 Hb_001214_180 Hb_001214_180 Hb_183612_070--Hb_001214_180 Hb_000615_050 Hb_000615_050 Hb_183612_070--Hb_000615_050 Hb_100886_010 Hb_100886_010 Hb_183612_070--Hb_100886_010 Hb_000139_340 Hb_000139_340 Hb_183612_070--Hb_000139_340 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_000120_040 Hb_000120_040 Hb_009150_030--Hb_000120_040 Hb_009150_030--Hb_001214_180 Hb_007576_150 Hb_007576_150 Hb_009150_030--Hb_007576_150 Hb_002290_030 Hb_002290_030 Hb_009150_030--Hb_002290_030 Hb_000318_130 Hb_000318_130 Hb_009150_030--Hb_000318_130 Hb_000460_070 Hb_000460_070 Hb_001229_020--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_001229_020--Hb_008698_010 Hb_001621_060 Hb_001621_060 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0762652 0.728247 0.529076 0.381849 0.0522957 0.084143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.570941 0.818399 0.693926 0.384434 2.49503

CAGE analysis