Hb_002475_140

Information

Type -
Description -
Location Contig2475: 119643-121775
Sequence    

Annotation

kegg
ID rcu:RCOM_0241900
description hypothetical protein
nr
ID XP_012086451.1
description PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
swissprot
ID Q681K7
description Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1
trembl
ID B9T5L6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0241900 PE=4 SV=1
Gene Ontology
ID GO:0005887
description protein gamete expressed 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002475_140 0.0 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
2 Hb_008179_010 0.1243367002 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
3 Hb_000086_390 0.1462272872 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
4 Hb_002780_030 0.1512180564 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
5 Hb_140459_010 0.1535053961 - - thioredoxin f-type, putative [Ricinus communis]
6 Hb_020378_060 0.1777279781 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
7 Hb_000032_400 0.1789245268 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
8 Hb_011310_180 0.1793954919 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
9 Hb_004672_020 0.1814366732 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
10 Hb_002527_040 0.1815232344 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
11 Hb_007904_040 0.1821647426 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
12 Hb_001998_200 0.183377563 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
13 Hb_000016_200 0.183870717 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005305_020 0.1888706519 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
15 Hb_002783_150 0.190689972 - - cyclophilin [Hevea brasiliensis]
16 Hb_183612_070 0.193327649 - - unnamed protein product [Vitis vinifera]
17 Hb_010672_030 0.1933698146 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
18 Hb_000175_050 0.1967045337 - - -
19 Hb_000032_510 0.1982326788 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
20 Hb_000388_060 0.1984727513 - - fructokinase [Manihot esculenta]

Gene co-expression network

sample Hb_002475_140 Hb_002475_140 Hb_008179_010 Hb_008179_010 Hb_002475_140--Hb_008179_010 Hb_000086_390 Hb_000086_390 Hb_002475_140--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_002475_140--Hb_002780_030 Hb_140459_010 Hb_140459_010 Hb_002475_140--Hb_140459_010 Hb_020378_060 Hb_020378_060 Hb_002475_140--Hb_020378_060 Hb_000032_400 Hb_000032_400 Hb_002475_140--Hb_000032_400 Hb_001269_070 Hb_001269_070 Hb_008179_010--Hb_001269_070 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_008179_010--Hb_000086_390 Hb_008179_010--Hb_020378_060 Hb_003935_080 Hb_003935_080 Hb_008179_010--Hb_003935_080 Hb_002527_040 Hb_002527_040 Hb_000086_390--Hb_002527_040 Hb_011310_180 Hb_011310_180 Hb_000086_390--Hb_011310_180 Hb_000086_390--Hb_002780_030 Hb_000086_390--Hb_020378_060 Hb_004672_020 Hb_004672_020 Hb_002780_030--Hb_004672_020 Hb_005305_020 Hb_005305_020 Hb_002780_030--Hb_005305_020 Hb_002780_030--Hb_002527_040 Hb_002780_030--Hb_008179_010 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_001898_180 Hb_001898_180 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090 Hb_011053_030 Hb_011053_030 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119371 0.128391 0.11678 0.1864 0.0231346 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135818 0.0854866 0.0806558 0.0511049 0.314463

CAGE analysis