Hb_000086_390

Information

Type -
Description -
Location Contig86: 302770-303219
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26110g
description POPTRDRAFT_553333; hypothetical protein
nr
ID XP_012085268.1
description PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17654 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60729: 302570-303471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_390 0.0 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
2 Hb_002527_040 0.1211935276 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
3 Hb_008179_010 0.1316945231 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
4 Hb_011310_180 0.1345716414 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
5 Hb_002780_030 0.1401601734 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
6 Hb_002475_140 0.1462272872 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
7 Hb_020378_060 0.1471715591 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
8 Hb_000599_210 0.1557039171 - - serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000032_400 0.1561829332 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
10 Hb_004672_020 0.1616937985 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
11 Hb_000140_060 0.1630169084 - - 50S ribosomal protein L5, putative [Ricinus communis]
12 Hb_000188_060 0.1661252176 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
13 Hb_000016_200 0.167823028 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007904_040 0.1684585851 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
15 Hb_001842_020 0.1691964629 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
16 Hb_003462_080 0.1714968482 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_001269_070 0.1715723809 - - double-stranded RNA binding protein, putative [Ricinus communis]
18 Hb_011053_030 0.172935341 - - -
19 Hb_005305_020 0.1743579535 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
20 Hb_003226_250 0.1756524048 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_390 Hb_000086_390 Hb_002527_040 Hb_002527_040 Hb_000086_390--Hb_002527_040 Hb_008179_010 Hb_008179_010 Hb_000086_390--Hb_008179_010 Hb_011310_180 Hb_011310_180 Hb_000086_390--Hb_011310_180 Hb_002780_030 Hb_002780_030 Hb_000086_390--Hb_002780_030 Hb_002475_140 Hb_002475_140 Hb_000086_390--Hb_002475_140 Hb_020378_060 Hb_020378_060 Hb_000086_390--Hb_020378_060 Hb_002527_040--Hb_002780_030 Hb_001916_150 Hb_001916_150 Hb_002527_040--Hb_001916_150 Hb_026314_030 Hb_026314_030 Hb_002527_040--Hb_026314_030 Hb_000032_400 Hb_000032_400 Hb_002527_040--Hb_000032_400 Hb_002527_040--Hb_008179_010 Hb_001269_070 Hb_001269_070 Hb_008179_010--Hb_001269_070 Hb_008179_010--Hb_002475_140 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_008179_010--Hb_020378_060 Hb_003935_080 Hb_003935_080 Hb_008179_010--Hb_003935_080 Hb_003462_080 Hb_003462_080 Hb_011310_180--Hb_003462_080 Hb_001842_020 Hb_001842_020 Hb_011310_180--Hb_001842_020 Hb_011310_180--Hb_002780_030 Hb_010672_030 Hb_010672_030 Hb_011310_180--Hb_010672_030 Hb_000291_290 Hb_000291_290 Hb_011310_180--Hb_000291_290 Hb_004672_020 Hb_004672_020 Hb_002780_030--Hb_004672_020 Hb_005305_020 Hb_005305_020 Hb_002780_030--Hb_005305_020 Hb_002780_030--Hb_002475_140 Hb_002780_030--Hb_008179_010 Hb_140459_010 Hb_140459_010 Hb_002475_140--Hb_140459_010 Hb_002475_140--Hb_020378_060 Hb_002475_140--Hb_000032_400 Hb_001898_180 Hb_001898_180 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.837847 7.58028 7.36943 17.8911 0.468022 1.13439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77857 7.691 4.37955 2.54514 23.8858

CAGE analysis