Hb_003462_080

Information

Type -
Description -
Location Contig3462: 108957-110216
Sequence    

Annotation

kegg
ID rcu:RCOM_0481340
description Protein kinase APK1A, chloroplast precursor, putative
nr
ID XP_002530930.1
description Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LP77
description Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=2 SV=1
trembl
ID B9SY61
description Protein kinase APK1A, chloroplast, putative OS=Ricinus communis GN=RCOM_0481340 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_080 0.0 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
2 Hb_011310_180 0.1338402778 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
3 Hb_000808_150 0.1432504923 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
4 Hb_000246_130 0.1470201988 - - tubulin alpha chain, putative [Ricinus communis]
5 Hb_004449_250 0.1502418079 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
6 Hb_011360_110 0.1517192438 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
7 Hb_000320_350 0.1521150842 - - hypothetical protein RCOM_0904330 [Ricinus communis]
8 Hb_000077_310 0.154967691 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
9 Hb_084147_010 0.1574331823 - - amino acid transporter, putative [Ricinus communis]
10 Hb_003226_250 0.1575337829 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
11 Hb_003470_110 0.1583190636 - - unnamed protein product [Vitis vinifera]
12 Hb_001250_080 0.158370982 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
13 Hb_002596_080 0.161977387 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
14 Hb_026527_010 0.1630114769 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
15 Hb_000879_150 0.1631400415 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001474_020 0.1633940418 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
17 Hb_000422_080 0.1641952992 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
18 Hb_000603_020 0.1642154019 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
19 Hb_029920_060 0.1669132973 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
20 Hb_001864_080 0.1670077871 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]

Gene co-expression network

sample Hb_003462_080 Hb_003462_080 Hb_011310_180 Hb_011310_180 Hb_003462_080--Hb_011310_180 Hb_000808_150 Hb_000808_150 Hb_003462_080--Hb_000808_150 Hb_000246_130 Hb_000246_130 Hb_003462_080--Hb_000246_130 Hb_004449_250 Hb_004449_250 Hb_003462_080--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_003462_080--Hb_011360_110 Hb_000320_350 Hb_000320_350 Hb_003462_080--Hb_000320_350 Hb_001842_020 Hb_001842_020 Hb_011310_180--Hb_001842_020 Hb_000086_390 Hb_000086_390 Hb_011310_180--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_011310_180--Hb_002780_030 Hb_010672_030 Hb_010672_030 Hb_011310_180--Hb_010672_030 Hb_000291_290 Hb_000291_290 Hb_011310_180--Hb_000291_290 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_019516_060 Hb_019516_060 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_004449_250--Hb_000320_350 Hb_004449_250--Hb_011360_110 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030 Hb_001474_020 Hb_001474_020 Hb_011360_110--Hb_001474_020 Hb_028639_030 Hb_028639_030 Hb_011360_110--Hb_028639_030 Hb_132840_160 Hb_132840_160 Hb_011360_110--Hb_132840_160 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_011360_110--Hb_000320_350 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00074 2.54709 2.93811 9.76571 0.272589 0.402874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49293 2.01757 0.449232 1.33781 6.62342

CAGE analysis