Hb_011310_180

Information

Type -
Description -
Location Contig11310: 100084-103703
Sequence    

Annotation

kegg
ID rcu:RCOM_0924040
description phopholipase d alpha, putative (EC:3.1.4.4)
nr
ID XP_012076573.1
description PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
swissprot
ID P86387
description Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1
trembl
ID A0A067KBK0
description Phospholipase D OS=Jatropha curcas GN=JCGZ_07167 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phospholipase d alpha 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03919: 100263-100392 , PASA_asmbl_03921: 102312-102502 , PASA_asmbl_03923: 103089-103673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_180 0.0 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
2 Hb_003462_080 0.1338402778 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
3 Hb_001842_020 0.1344093887 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
4 Hb_000086_390 0.1345716414 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
5 Hb_002780_030 0.162352795 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
6 Hb_010672_030 0.1676231258 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
7 Hb_000291_290 0.1689580466 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007904_040 0.1701214015 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
9 Hb_008179_010 0.1735604057 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
10 Hb_000032_140 0.17642883 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001621_100 0.1774130314 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
12 Hb_002200_070 0.1776001499 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
13 Hb_002759_220 0.1784612191 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_002475_140 0.1793954919 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
15 Hb_004672_020 0.179987422 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
16 Hb_000140_060 0.183305479 - - 50S ribosomal protein L5, putative [Ricinus communis]
17 Hb_000808_150 0.187455912 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
18 Hb_000032_510 0.1890563159 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
19 Hb_002284_270 0.1895377508 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
20 Hb_001269_070 0.1895699354 - - double-stranded RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011310_180 Hb_011310_180 Hb_003462_080 Hb_003462_080 Hb_011310_180--Hb_003462_080 Hb_001842_020 Hb_001842_020 Hb_011310_180--Hb_001842_020 Hb_000086_390 Hb_000086_390 Hb_011310_180--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_011310_180--Hb_002780_030 Hb_010672_030 Hb_010672_030 Hb_011310_180--Hb_010672_030 Hb_000291_290 Hb_000291_290 Hb_011310_180--Hb_000291_290 Hb_000808_150 Hb_000808_150 Hb_003462_080--Hb_000808_150 Hb_000246_130 Hb_000246_130 Hb_003462_080--Hb_000246_130 Hb_004449_250 Hb_004449_250 Hb_003462_080--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_003462_080--Hb_011360_110 Hb_000320_350 Hb_000320_350 Hb_003462_080--Hb_000320_350 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_007904_040 Hb_007904_040 Hb_001842_020--Hb_007904_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_002527_040 Hb_002527_040 Hb_000086_390--Hb_002527_040 Hb_008179_010 Hb_008179_010 Hb_000086_390--Hb_008179_010 Hb_000086_390--Hb_002780_030 Hb_002475_140 Hb_002475_140 Hb_000086_390--Hb_002475_140 Hb_020378_060 Hb_020378_060 Hb_000086_390--Hb_020378_060 Hb_004672_020 Hb_004672_020 Hb_002780_030--Hb_004672_020 Hb_005305_020 Hb_005305_020 Hb_002780_030--Hb_005305_020 Hb_002780_030--Hb_002475_140 Hb_002780_030--Hb_002527_040 Hb_002780_030--Hb_008179_010 Hb_010672_030--Hb_008179_010 Hb_001998_200 Hb_001998_200 Hb_010672_030--Hb_001998_200 Hb_002200_070 Hb_002200_070 Hb_010672_030--Hb_002200_070 Hb_003226_200 Hb_003226_200 Hb_010672_030--Hb_003226_200 Hb_000057_130 Hb_000057_130 Hb_010672_030--Hb_000057_130 Hb_000622_060 Hb_000622_060 Hb_010672_030--Hb_000622_060 Hb_001864_080 Hb_001864_080 Hb_000291_290--Hb_001864_080 Hb_000256_080 Hb_000256_080 Hb_000291_290--Hb_000256_080 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_005144_120 Hb_005144_120 Hb_000291_290--Hb_005144_120 Hb_000390_190 Hb_000390_190 Hb_000291_290--Hb_000390_190 Hb_006925_050 Hb_006925_050 Hb_000291_290--Hb_006925_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189537 1.12761 1.65537 3.64692 0.0967911 0.0926312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50247 1.01536 0.18561 0.607569 3.93216

CAGE analysis