Hb_008179_010

Information

Type transcription factor
Description TF Family: ARF
Location Contig8179: 8559-11687
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03890g
description POPTRDRAFT_765287; hypothetical protein
nr
ID XP_012093265.1
description PREDICTED: auxin response factor 16 [Jatropha curcas]
swissprot
ID Q653H7
description Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1
trembl
ID A0A067LJC0
description Auxin response factor OS=Jatropha curcas GN=JCGZ_20054 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59494: 8575-11648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008179_010 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
2 Hb_001269_070 0.1071480443 - - double-stranded RNA binding protein, putative [Ricinus communis]
3 Hb_002475_140 0.1243367002 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
4 Hb_000388_060 0.1289527479 - - fructokinase [Manihot esculenta]
5 Hb_000086_390 0.1316945231 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
6 Hb_020378_060 0.1330668055 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
7 Hb_003935_080 0.1382234579 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
8 Hb_000175_050 0.1486620541 - - -
9 Hb_010672_030 0.1491282956 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
10 Hb_007904_040 0.1503968886 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
11 Hb_003226_200 0.1505865489 - - magnesium/proton exchanger, putative [Ricinus communis]
12 Hb_000032_140 0.1520967753 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002780_030 0.1524990052 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
14 Hb_000110_060 0.1537947228 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
15 Hb_001998_200 0.1538092518 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
16 Hb_000991_020 0.1547136818 - - amino acid transporter, putative [Ricinus communis]
17 Hb_005305_020 0.155701066 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
18 Hb_140459_010 0.1578155587 - - thioredoxin f-type, putative [Ricinus communis]
19 Hb_000599_210 0.1579795064 - - serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_000130_200 0.1582340468 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_008179_010 Hb_008179_010 Hb_001269_070 Hb_001269_070 Hb_008179_010--Hb_001269_070 Hb_002475_140 Hb_002475_140 Hb_008179_010--Hb_002475_140 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_000086_390 Hb_000086_390 Hb_008179_010--Hb_000086_390 Hb_020378_060 Hb_020378_060 Hb_008179_010--Hb_020378_060 Hb_003935_080 Hb_003935_080 Hb_008179_010--Hb_003935_080 Hb_001269_070--Hb_003935_080 Hb_000032_140 Hb_000032_140 Hb_001269_070--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_001269_070--Hb_000395_010 Hb_003226_200 Hb_003226_200 Hb_001269_070--Hb_003226_200 Hb_002486_020 Hb_002486_020 Hb_001269_070--Hb_002486_020 Hb_002475_140--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_002475_140--Hb_002780_030 Hb_140459_010 Hb_140459_010 Hb_002475_140--Hb_140459_010 Hb_002475_140--Hb_020378_060 Hb_000032_400 Hb_000032_400 Hb_002475_140--Hb_000032_400 Hb_001789_200 Hb_001789_200 Hb_000388_060--Hb_001789_200 Hb_002053_010 Hb_002053_010 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180 Hb_002527_040 Hb_002527_040 Hb_000086_390--Hb_002527_040 Hb_011310_180 Hb_011310_180 Hb_000086_390--Hb_011310_180 Hb_000086_390--Hb_002780_030 Hb_000086_390--Hb_020378_060 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_020378_060--Hb_000388_060 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090 Hb_003935_080--Hb_005489_090 Hb_000594_100 Hb_000594_100 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001124_180 Hb_001792_030 Hb_001792_030 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.990939 4.62356 9.08056 12.7284 0.420429 0.155746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36141 6.88644 5.61127 5.23631 22.037

CAGE analysis