Hb_002486_020

Information

Type -
Description -
Location Contig2486: 19447-30726
Sequence    

Annotation

kegg
ID rcu:RCOM_0687220
description ATP binding protein, putative
nr
ID XP_002520775.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SIZ3
description Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=2 SV=2
trembl
ID B9S456
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0687220 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25871: 19794-21176 , PASA_asmbl_25872: 29044-30153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002284_220 0.1089736024 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
3 Hb_000110_060 0.1190258016 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
4 Hb_002759_070 0.1276002572 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
5 Hb_003226_200 0.1319063186 - - magnesium/proton exchanger, putative [Ricinus communis]
6 Hb_000768_150 0.1350850358 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
7 Hb_005470_030 0.1356953019 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
8 Hb_000622_060 0.1371140753 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
9 Hb_161396_010 0.1396364722 - - hypothetical protein F383_26394 [Gossypium arboreum]
10 Hb_012851_020 0.1443138573 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001269_070 0.1450494831 - - double-stranded RNA binding protein, putative [Ricinus communis]
12 Hb_000331_350 0.149430367 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
13 Hb_003371_070 0.1507429313 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
14 Hb_000049_160 0.15229263 - - tyrosine decarboxylase family protein [Populus trichocarpa]
15 Hb_000130_200 0.1527272562 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
16 Hb_033152_110 0.1538021324 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
17 Hb_012053_020 0.1546163451 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
18 Hb_000070_110 0.1556485578 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
19 Hb_000077_310 0.1571856964 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
20 Hb_000206_230 0.1599324613 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002486_020 Hb_002486_020 Hb_002284_220 Hb_002284_220 Hb_002486_020--Hb_002284_220 Hb_000110_060 Hb_000110_060 Hb_002486_020--Hb_000110_060 Hb_002759_070 Hb_002759_070 Hb_002486_020--Hb_002759_070 Hb_003226_200 Hb_003226_200 Hb_002486_020--Hb_003226_200 Hb_000768_150 Hb_000768_150 Hb_002486_020--Hb_000768_150 Hb_005470_030 Hb_005470_030 Hb_002486_020--Hb_005470_030 Hb_002284_220--Hb_005470_030 Hb_002284_220--Hb_000110_060 Hb_033312_080 Hb_033312_080 Hb_002284_220--Hb_033312_080 Hb_000108_240 Hb_000108_240 Hb_002284_220--Hb_000108_240 Hb_010172_110 Hb_010172_110 Hb_002284_220--Hb_010172_110 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000120_940 Hb_000120_940 Hb_002759_070--Hb_000120_940 Hb_000920_160 Hb_000920_160 Hb_002759_070--Hb_000920_160 Hb_161396_010 Hb_161396_010 Hb_002759_070--Hb_161396_010 Hb_000438_120 Hb_000438_120 Hb_002759_070--Hb_000438_120 Hb_001621_100 Hb_001621_100 Hb_002759_070--Hb_001621_100 Hb_033152_110 Hb_033152_110 Hb_003226_200--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_003226_200--Hb_000622_060 Hb_000115_360 Hb_000115_360 Hb_003226_200--Hb_000115_360 Hb_000979_260 Hb_000979_260 Hb_003226_200--Hb_000979_260 Hb_002759_220 Hb_002759_220 Hb_003226_200--Hb_002759_220 Hb_000008_060 Hb_000008_060 Hb_003226_200--Hb_000008_060 Hb_036388_010 Hb_036388_010 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_005470_030--Hb_000110_060 Hb_000477_040 Hb_000477_040 Hb_005470_030--Hb_000477_040 Hb_005470_030--Hb_000849_120 Hb_020437_020 Hb_020437_020 Hb_005470_030--Hb_020437_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138899 0.78966 5.26792 7.33625 0.13548 0.416515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29318 2.37841 1.67406 4.07925 7.06461

CAGE analysis