Hb_005470_030

Information

Type -
Description -
Location Contig5470: 17408-34218
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09800g
description POPTRDRAFT_575259; hypothetical protein
nr
ID XP_012079949.1
description PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
swissprot
ID Q94A08
description Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2
trembl
ID B9IF13
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09800g PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable galactinol--sucrose galactosyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48018: 28633-34096
cDNA
(Sanger)
(ID:Location)		 049_H16.ab1: 31346-34096

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005470_030 0.0 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
2 Hb_002284_220 0.0959014346 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
3 Hb_000110_060 0.1150729221 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
4 Hb_000477_040 0.1157963077 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002486_020 0.1356953019 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000849_120 0.1434115024 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
7 Hb_020437_020 0.1494135003 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
8 Hb_000108_240 0.1494944726 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
9 Hb_005622_020 0.158143185 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
10 Hb_003226_200 0.1595137268 - - magnesium/proton exchanger, putative [Ricinus communis]
11 Hb_021943_090 0.1603877526 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
12 Hb_002687_160 0.161484748 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
13 Hb_001863_020 0.1618443093 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
14 Hb_000789_120 0.1652427186 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
15 Hb_000049_180 0.1671460068 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
16 Hb_000331_350 0.1683403794 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
17 Hb_000193_340 0.1693748854 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
18 Hb_006829_060 0.1693956844 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_000049_160 0.1699861689 - - tyrosine decarboxylase family protein [Populus trichocarpa]
20 Hb_000181_460 0.1706975575 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005470_030 Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_005470_030--Hb_002284_220 Hb_000110_060 Hb_000110_060 Hb_005470_030--Hb_000110_060 Hb_000477_040 Hb_000477_040 Hb_005470_030--Hb_000477_040 Hb_002486_020 Hb_002486_020 Hb_005470_030--Hb_002486_020 Hb_000849_120 Hb_000849_120 Hb_005470_030--Hb_000849_120 Hb_020437_020 Hb_020437_020 Hb_005470_030--Hb_020437_020 Hb_002284_220--Hb_002486_020 Hb_002284_220--Hb_000110_060 Hb_033312_080 Hb_033312_080 Hb_002284_220--Hb_033312_080 Hb_000108_240 Hb_000108_240 Hb_002284_220--Hb_000108_240 Hb_010172_110 Hb_010172_110 Hb_002284_220--Hb_010172_110 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_003878_050 Hb_003878_050 Hb_000477_040--Hb_003878_050 Hb_000477_040--Hb_000849_120 Hb_000477_040--Hb_000110_060 Hb_000465_320 Hb_000465_320 Hb_000477_040--Hb_000465_320 Hb_001904_050 Hb_001904_050 Hb_000477_040--Hb_001904_050 Hb_002486_020--Hb_000110_060 Hb_002759_070 Hb_002759_070 Hb_002486_020--Hb_002759_070 Hb_003226_200 Hb_003226_200 Hb_002486_020--Hb_003226_200 Hb_000768_150 Hb_000768_150 Hb_002486_020--Hb_000768_150 Hb_000684_390 Hb_000684_390 Hb_000849_120--Hb_000684_390 Hb_004326_010 Hb_004326_010 Hb_000849_120--Hb_004326_010 Hb_000849_120--Hb_000181_460 Hb_009252_010 Hb_009252_010 Hb_000849_120--Hb_009252_010 Hb_005348_110 Hb_005348_110 Hb_000849_120--Hb_005348_110 Hb_020437_020--Hb_002284_220 Hb_005167_020 Hb_005167_020 Hb_020437_020--Hb_005167_020 Hb_139848_010 Hb_139848_010 Hb_020437_020--Hb_139848_010 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_001437_280 Hb_001437_280 Hb_020437_020--Hb_001437_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.582456 1.09141 8.64776 10.6462 0.301388 0.511469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68871 2.31655 6.17815 4.5781 10.9154

CAGE analysis