Hb_139848_010

Information

Type -
Description -
Location Contig139848: 4884-8710
Sequence    

Annotation

kegg
ID cic:CICLE_v10032297mg
description hypothetical protein
nr
ID XP_011032852.1
description PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
swissprot
ID Q6ESG1
description Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1
trembl
ID V4SPX1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032297mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139848_010 0.0 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
2 Hb_000890_080 0.1347453413 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
3 Hb_002232_160 0.1437867707 - - Transaminase mtnE, putative [Ricinus communis]
4 Hb_004586_160 0.1453875956 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
5 Hb_007416_110 0.1689564798 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
6 Hb_003207_010 0.1694244643 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
7 Hb_020437_020 0.1722617637 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
8 Hb_000107_270 0.1767406549 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
9 Hb_000070_110 0.1772879496 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
10 Hb_001623_190 0.1797405479 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
11 Hb_005167_020 0.1802377188 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_001728_140 0.181717655 - - -
13 Hb_002811_200 0.1874390188 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
14 Hb_001863_020 0.1874575035 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
15 Hb_001040_150 0.1874606443 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003186_040 0.1879118375 - - PREDICTED: protein DENND6A [Jatropha curcas]
17 Hb_003440_020 0.1881005914 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_000548_070 0.1907663644 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
19 Hb_004291_040 0.1912242327 - - hexokinase [Manihot esculenta]
20 Hb_000139_340 0.192504194 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_139848_010 Hb_139848_010 Hb_000890_080 Hb_000890_080 Hb_139848_010--Hb_000890_080 Hb_002232_160 Hb_002232_160 Hb_139848_010--Hb_002232_160 Hb_004586_160 Hb_004586_160 Hb_139848_010--Hb_004586_160 Hb_007416_110 Hb_007416_110 Hb_139848_010--Hb_007416_110 Hb_003207_010 Hb_003207_010 Hb_139848_010--Hb_003207_010 Hb_020437_020 Hb_020437_020 Hb_139848_010--Hb_020437_020 Hb_003440_020 Hb_003440_020 Hb_000890_080--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_000890_080--Hb_004348_040 Hb_000890_080--Hb_002232_160 Hb_000070_110 Hb_000070_110 Hb_000890_080--Hb_000070_110 Hb_002529_090 Hb_002529_090 Hb_000890_080--Hb_002529_090 Hb_000890_080--Hb_007416_110 Hb_002232_160--Hb_000070_110 Hb_002232_160--Hb_003440_020 Hb_002232_160--Hb_002529_090 Hb_005015_110 Hb_005015_110 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070 Hb_004586_160--Hb_000890_080 Hb_002631_130 Hb_002631_130 Hb_004586_160--Hb_002631_130 Hb_009615_060 Hb_009615_060 Hb_004586_160--Hb_009615_060 Hb_000548_070 Hb_000548_070 Hb_004586_160--Hb_000548_070 Hb_005588_100 Hb_005588_100 Hb_004586_160--Hb_005588_100 Hb_003044_080 Hb_003044_080 Hb_004586_160--Hb_003044_080 Hb_000465_150 Hb_000465_150 Hb_007416_110--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_007416_110--Hb_003440_020 Hb_002486_080 Hb_002486_080 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_094970_010 Hb_094970_010 Hb_003207_010--Hb_094970_010 Hb_001731_030 Hb_001731_030 Hb_003207_010--Hb_001731_030 Hb_003207_010--Hb_005015_110 Hb_000808_170 Hb_000808_170 Hb_003207_010--Hb_000808_170 Hb_001493_150 Hb_001493_150 Hb_003207_010--Hb_001493_150 Hb_000139_340 Hb_000139_340 Hb_003207_010--Hb_000139_340 Hb_005470_030 Hb_005470_030 Hb_020437_020--Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_020437_020--Hb_002284_220 Hb_005167_020 Hb_005167_020 Hb_020437_020--Hb_005167_020 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_001437_280 Hb_001437_280 Hb_020437_020--Hb_001437_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0952257 0.0846689 0.370198 0.195038 0.0254234 0.022351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174401 0.13715 0.333991 0.590006 0.64917

CAGE analysis