Hb_001437_280

Information

Type -
Description -
Location Contig1437: 292315-298022
Sequence    

Annotation

kegg
ID rcu:RCOM_0473330
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_002523698.1
description AMP dependent CoA ligase, putative [Ricinus communis]
swissprot
ID Q9M0X9
description 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1
trembl
ID B9SCH9
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_0473330 PE=4 SV=1
Gene Ontology
ID GO:0004321
description 4-coumarate-- ligase-like 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11544: 292370-297855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001437_280 0.0 - - AMP dependent CoA ligase, putative [Ricinus communis]
2 Hb_007621_010 0.1544315091 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
3 Hb_000820_140 0.1678503475 - - histone H4 [Zea mays]
4 Hb_000718_040 0.180987707 - - PREDICTED: lipase member N [Jatropha curcas]
5 Hb_020437_020 0.1851748039 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
6 Hb_003055_110 0.1870265988 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002486_060 0.1885786341 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
8 Hb_000307_070 0.1891892614 - - protein kinase, putative [Ricinus communis]
9 Hb_033312_080 0.1932669479 - - aldose-1-epimerase, putative [Ricinus communis]
10 Hb_005917_020 0.1944891993 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
11 Hb_000210_080 0.1991176902 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_169209_010 0.2038041586 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
13 Hb_001373_130 0.204830219 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003680_090 0.2053872043 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
15 Hb_000130_200 0.2066026672 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
16 Hb_000594_100 0.2092474551 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
17 Hb_000110_200 0.2095008925 - - unnamed protein product [Vitis vinifera]
18 Hb_000890_080 0.2097332107 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_001863_180 0.2098835514 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
20 Hb_139848_010 0.2146399945 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_001437_280 Hb_001437_280 Hb_007621_010 Hb_007621_010 Hb_001437_280--Hb_007621_010 Hb_000820_140 Hb_000820_140 Hb_001437_280--Hb_000820_140 Hb_000718_040 Hb_000718_040 Hb_001437_280--Hb_000718_040 Hb_020437_020 Hb_020437_020 Hb_001437_280--Hb_020437_020 Hb_003055_110 Hb_003055_110 Hb_001437_280--Hb_003055_110 Hb_002486_060 Hb_002486_060 Hb_001437_280--Hb_002486_060 Hb_001863_180 Hb_001863_180 Hb_007621_010--Hb_001863_180 Hb_033312_080 Hb_033312_080 Hb_007621_010--Hb_033312_080 Hb_000042_090 Hb_000042_090 Hb_007621_010--Hb_000042_090 Hb_003659_010 Hb_003659_010 Hb_007621_010--Hb_003659_010 Hb_005455_010 Hb_005455_010 Hb_007621_010--Hb_005455_010 Hb_001322_230 Hb_001322_230 Hb_000820_140--Hb_001322_230 Hb_068194_010 Hb_068194_010 Hb_000820_140--Hb_068194_010 Hb_000307_070 Hb_000307_070 Hb_000820_140--Hb_000307_070 Hb_000676_020 Hb_000676_020 Hb_000820_140--Hb_000676_020 Hb_001587_040 Hb_001587_040 Hb_000820_140--Hb_001587_040 Hb_004348_040 Hb_004348_040 Hb_000820_140--Hb_004348_040 Hb_000189_150 Hb_000189_150 Hb_000718_040--Hb_000189_150 Hb_002374_300 Hb_002374_300 Hb_000718_040--Hb_002374_300 Hb_000718_040--Hb_000820_140 Hb_000718_040--Hb_001322_230 Hb_005489_090 Hb_005489_090 Hb_000718_040--Hb_005489_090 Hb_005917_020 Hb_005917_020 Hb_000718_040--Hb_005917_020 Hb_005470_030 Hb_005470_030 Hb_020437_020--Hb_005470_030 Hb_002284_220 Hb_002284_220 Hb_020437_020--Hb_002284_220 Hb_005167_020 Hb_005167_020 Hb_020437_020--Hb_005167_020 Hb_139848_010 Hb_139848_010 Hb_020437_020--Hb_139848_010 Hb_001863_020 Hb_001863_020 Hb_020437_020--Hb_001863_020 Hb_000594_070 Hb_000594_070 Hb_003055_110--Hb_000594_070 Hb_000189_170 Hb_000189_170 Hb_003055_110--Hb_000189_170 Hb_010172_110 Hb_010172_110 Hb_003055_110--Hb_010172_110 Hb_003055_110--Hb_068194_010 Hb_114310_100 Hb_114310_100 Hb_003055_110--Hb_114310_100 Hb_000620_020 Hb_000620_020 Hb_002486_060--Hb_000620_020 Hb_000331_570 Hb_000331_570 Hb_002486_060--Hb_000331_570 Hb_001390_100 Hb_001390_100 Hb_002486_060--Hb_001390_100 Hb_002627_040 Hb_002627_040 Hb_002486_060--Hb_002627_040 Hb_101334_020 Hb_101334_020 Hb_002486_060--Hb_101334_020 Hb_001143_100 Hb_001143_100 Hb_002486_060--Hb_001143_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.217618 5.03971 40.8643 9.29986 0 2.68881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98277 11.4921 15.4441 20.4342 37.9871

CAGE analysis