Hb_000042_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig42: 95562-97166
Sequence    

Annotation

kegg
ID rcu:RCOM_0280040
description Disease resistance protein RPS2, putative
nr
ID XP_002534511.1
description Disease resistance protein RPS2, putative [Ricinus communis]
swissprot
ID Q8L3R3
description Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2
trembl
ID B9T8E2
description Disease resistance protein RPS2, putative OS=Ricinus communis GN=RCOM_0280040 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41462: 95648-96746 , PASA_asmbl_41463: 96776-96908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_090 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
2 Hb_000640_330 0.1190907827 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003915_020 0.1196850788 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
4 Hb_003119_130 0.1285715131 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
5 Hb_000164_110 0.1295776699 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
6 Hb_000147_020 0.1311953968 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
7 Hb_000694_050 0.1338967399 - - Nuclease PA3, putative [Ricinus communis]
8 Hb_001501_020 0.1355873193 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
9 Hb_003141_060 0.1357761485 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
10 Hb_000260_750 0.1432820999 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
11 Hb_000500_360 0.1441407625 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_000175_200 0.1453537194 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004724_180 0.1479767111 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
14 Hb_000901_010 0.1480411155 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
15 Hb_001227_140 0.1483453894 - - PREDICTED: protein ROS1 [Jatropha curcas]
16 Hb_004102_080 0.1493119435 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
17 Hb_006970_120 0.1506721847 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001579_060 0.1511449708 - - carbonic anhydrase, putative [Ricinus communis]
19 Hb_078582_010 0.151449773 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
20 Hb_000987_020 0.1522784967 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_090 Hb_000042_090 Hb_000640_330 Hb_000640_330 Hb_000042_090--Hb_000640_330 Hb_003915_020 Hb_003915_020 Hb_000042_090--Hb_003915_020 Hb_003119_130 Hb_003119_130 Hb_000042_090--Hb_003119_130 Hb_000164_110 Hb_000164_110 Hb_000042_090--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_000042_090--Hb_000147_020 Hb_000694_050 Hb_000694_050 Hb_000042_090--Hb_000694_050 Hb_000640_330--Hb_000147_020 Hb_004724_180 Hb_004724_180 Hb_000640_330--Hb_004724_180 Hb_000776_020 Hb_000776_020 Hb_000640_330--Hb_000776_020 Hb_000500_360 Hb_000500_360 Hb_000640_330--Hb_000500_360 Hb_000608_360 Hb_000608_360 Hb_000640_330--Hb_000608_360 Hb_001227_140 Hb_001227_140 Hb_003915_020--Hb_001227_140 Hb_004102_080 Hb_004102_080 Hb_003915_020--Hb_004102_080 Hb_003141_060 Hb_003141_060 Hb_003915_020--Hb_003141_060 Hb_121089_010 Hb_121089_010 Hb_003915_020--Hb_121089_010 Hb_000940_030 Hb_000940_030 Hb_003915_020--Hb_000940_030 Hb_000948_120 Hb_000948_120 Hb_003915_020--Hb_000948_120 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_001172_150 Hb_001172_150 Hb_003119_130--Hb_001172_150 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_006970_120 Hb_006970_120 Hb_000164_110--Hb_006970_120 Hb_000380_140 Hb_000380_140 Hb_000164_110--Hb_000380_140 Hb_004946_010 Hb_004946_010 Hb_000164_110--Hb_004946_010 Hb_002122_070 Hb_002122_070 Hb_000164_110--Hb_002122_070 Hb_000901_010 Hb_000901_010 Hb_000164_110--Hb_000901_010 Hb_000164_110--Hb_000147_020 Hb_000147_020--Hb_000500_360 Hb_000147_020--Hb_006970_120 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000260_750 Hb_000260_750 Hb_000147_020--Hb_000260_750 Hb_000147_020--Hb_000380_140 Hb_001579_060 Hb_001579_060 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_000987_020 Hb_000987_020 Hb_000694_050--Hb_000987_020 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_002601_140 Hb_002601_140 Hb_000694_050--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000694_050--Hb_002078_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.37985 12.6746 4.18185 0 0.0484211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.54536 0.461979 0.36778 6.16323 13.7731

CAGE analysis