Hb_000608_360

Information

Type -
Description -
Location Contig608: 201254-205902
Sequence    

Annotation

kegg
ID rcu:RCOM_1077680
description calreticulin, putative
nr
ID XP_002514817.1
description calreticulin, putative [Ricinus communis]
swissprot
ID O04153
description Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=1 SV=2
trembl
ID B9RM48
description Calreticulin, putative OS=Ricinus communis GN=RCOM_1077680 PE=3 SV=1
Gene Ontology
ID GO:0005789
description calreticulin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50861: 201323-205814 , PASA_asmbl_50862: 201533-202309
cDNA
(Sanger)
(ID:Location)		 010_H05.ab1: 203941-205804 , 026_F09.ab1: 203685-205814 , 032_D24.ab1: 203816-205814 , 033_M08.ab1: 203838-205814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_360 0.0 - - calreticulin, putative [Ricinus communis]
2 Hb_004724_180 0.110749894 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
3 Hb_003141_060 0.1109557749 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
4 Hb_000640_330 0.1282942602 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006277_080 0.1303600944 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
6 Hb_001300_160 0.1304047404 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
7 Hb_002276_030 0.1325146592 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
8 Hb_001377_210 0.1329029122 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_000968_010 0.1407617887 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
10 Hb_000853_050 0.1412951321 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_016687_010 0.1444599268 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
12 Hb_000092_060 0.1461115789 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
13 Hb_001508_030 0.1478673046 - - hypothetical protein VITISV_029808 [Vitis vinifera]
14 Hb_000914_190 0.152045541 - - xanthine dehydrogenase, putative [Ricinus communis]
15 Hb_002615_080 0.1522522818 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
16 Hb_010632_010 0.15269677 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
17 Hb_001172_150 0.1532535535 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
18 Hb_001227_140 0.1544898571 - - PREDICTED: protein ROS1 [Jatropha curcas]
19 Hb_008878_020 0.1551581598 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
20 Hb_000002_300 0.1551638536 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000608_360 Hb_000608_360 Hb_004724_180 Hb_004724_180 Hb_000608_360--Hb_004724_180 Hb_003141_060 Hb_003141_060 Hb_000608_360--Hb_003141_060 Hb_000640_330 Hb_000640_330 Hb_000608_360--Hb_000640_330 Hb_006277_080 Hb_006277_080 Hb_000608_360--Hb_006277_080 Hb_001300_160 Hb_001300_160 Hb_000608_360--Hb_001300_160 Hb_002276_030 Hb_002276_030 Hb_000608_360--Hb_002276_030 Hb_004724_180--Hb_000640_330 Hb_000500_360 Hb_000500_360 Hb_004724_180--Hb_000500_360 Hb_000042_090 Hb_000042_090 Hb_004724_180--Hb_000042_090 Hb_000147_020 Hb_000147_020 Hb_004724_180--Hb_000147_020 Hb_001172_150 Hb_001172_150 Hb_004724_180--Hb_001172_150 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_001227_140 Hb_001227_140 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120 Hb_000640_330--Hb_000147_020 Hb_000640_330--Hb_000042_090 Hb_000776_020 Hb_000776_020 Hb_000640_330--Hb_000776_020 Hb_000640_330--Hb_000500_360 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_006277_080--Hb_003141_060 Hb_000092_060 Hb_000092_060 Hb_001300_160--Hb_000092_060 Hb_000011_440 Hb_000011_440 Hb_001300_160--Hb_000011_440 Hb_001345_040 Hb_001345_040 Hb_001300_160--Hb_001345_040 Hb_002111_010 Hb_002111_010 Hb_001300_160--Hb_002111_010 Hb_002943_020 Hb_002943_020 Hb_001300_160--Hb_002943_020 Hb_001584_050 Hb_001584_050 Hb_001300_160--Hb_001584_050 Hb_008878_020 Hb_008878_020 Hb_002276_030--Hb_008878_020 Hb_001244_050 Hb_001244_050 Hb_002276_030--Hb_001244_050 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_002276_030--Hb_001172_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40352 44.4209 131.968 37.8314 7.35327 4.08819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02193 1.60068 3.05584 63.5978 248.232

CAGE analysis