Hb_001244_050

Information

Type -
Description -
Location Contig1244: 89650-93681
Sequence    

Annotation

kegg
ID rcu:RCOM_0855180
description hypothetical protein
nr
ID XP_012083825.1
description PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
swissprot
ID A0B6K6
description 3-dehydroquinate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=aroB' PE=3 SV=2
trembl
ID A0A067LAQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09741 PE=4 SV=1
Gene Ontology
ID GO:0003856
description 3-dehydroquinate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07406: 89786-90869 , PASA_asmbl_07407: 90930-92845 , PASA_asmbl_07408: 92921-93237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001244_050 0.0 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
2 Hb_002276_030 0.1208185579 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
3 Hb_008878_020 0.1331051426 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
4 Hb_000917_200 0.1375241845 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
5 Hb_016687_010 0.1466833164 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
6 Hb_002675_230 0.1550729503 - - PREDICTED: glutathione S-transferase L3-like [Populus euphratica]
7 Hb_000212_270 0.1572811652 - - calreticulin, putative [Ricinus communis]
8 Hb_006277_080 0.158182208 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
9 Hb_000853_050 0.1601202582 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001227_140 0.1650780858 - - PREDICTED: protein ROS1 [Jatropha curcas]
11 Hb_000608_360 0.1662948692 - - calreticulin, putative [Ricinus communis]
12 Hb_004724_180 0.1713992308 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
13 Hb_000062_050 0.1722906432 - - protein binding protein, putative [Ricinus communis]
14 Hb_001508_030 0.1725629787 - - hypothetical protein VITISV_029808 [Vitis vinifera]
15 Hb_002043_100 0.1750684861 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000093_140 0.1751623982 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
17 Hb_001266_130 0.1760576071 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
18 Hb_004306_130 0.1765274326 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
19 Hb_000697_020 0.1768926171 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
20 Hb_005050_050 0.1771059444 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]

Gene co-expression network

sample Hb_001244_050 Hb_001244_050 Hb_002276_030 Hb_002276_030 Hb_001244_050--Hb_002276_030 Hb_008878_020 Hb_008878_020 Hb_001244_050--Hb_008878_020 Hb_000917_200 Hb_000917_200 Hb_001244_050--Hb_000917_200 Hb_016687_010 Hb_016687_010 Hb_001244_050--Hb_016687_010 Hb_002675_230 Hb_002675_230 Hb_001244_050--Hb_002675_230 Hb_000212_270 Hb_000212_270 Hb_001244_050--Hb_000212_270 Hb_002276_030--Hb_008878_020 Hb_006277_080 Hb_006277_080 Hb_002276_030--Hb_006277_080 Hb_000608_360 Hb_000608_360 Hb_002276_030--Hb_000608_360 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_001172_150 Hb_001172_150 Hb_002276_030--Hb_001172_150 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_000697_020 Hb_000697_020 Hb_008878_020--Hb_000697_020 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_000917_200--Hb_006478_050 Hb_000062_050 Hb_000062_050 Hb_000917_200--Hb_000062_050 Hb_093077_010 Hb_093077_010 Hb_000917_200--Hb_093077_010 Hb_000917_200--Hb_016687_010 Hb_000891_010 Hb_000891_010 Hb_000917_200--Hb_000891_010 Hb_000917_200--Hb_008878_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_016687_010--Hb_008878_020 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_001689_070 Hb_001689_070 Hb_002675_230--Hb_001689_070 Hb_004306_130 Hb_004306_130 Hb_002675_230--Hb_004306_130 Hb_000866_040 Hb_000866_040 Hb_002675_230--Hb_000866_040 Hb_009102_010 Hb_009102_010 Hb_002675_230--Hb_009102_010 Hb_004324_320 Hb_004324_320 Hb_002675_230--Hb_004324_320 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000212_270--Hb_000697_020 Hb_001898_100 Hb_001898_100 Hb_000212_270--Hb_001898_100 Hb_000212_270--Hb_001172_150 Hb_000212_270--Hb_003119_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421668 1.36365 4.30852 0.802625 0.174423 0.260566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.027494 0 0 1.53474 4.40883

CAGE analysis