Hb_002276_030

Information

Type -
Description -
Location Contig2276: 37139-40798
Sequence    

Annotation

kegg
ID tcc:TCM_011417
description Armadillo/beta-catenin-like repeat family protein, putative
nr
ID XP_012080482.1
description PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
swissprot
ID Q9CAA7
description Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1
trembl
ID A0A061EAX1
description Armadillo/beta-catenin-like repeat family protein, putative OS=Theobroma cacao GN=TCM_011417 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23727: 37113-37387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_030 0.0 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
2 Hb_008878_020 0.1192029393 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
3 Hb_001244_050 0.1208185579 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
4 Hb_006277_080 0.1244398774 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
5 Hb_000608_360 0.1325146592 - - calreticulin, putative [Ricinus communis]
6 Hb_001508_030 0.1398638382 - - hypothetical protein VITISV_029808 [Vitis vinifera]
7 Hb_001172_150 0.142255587 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
8 Hb_004374_100 0.1458645188 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
9 Hb_016687_010 0.1475495682 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
10 Hb_000697_020 0.1484213427 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
11 Hb_000042_310 0.1512254992 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_000212_270 0.1522075424 - - calreticulin, putative [Ricinus communis]
13 Hb_000853_050 0.1541575905 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003141_060 0.1562385365 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
15 Hb_061126_010 0.1566974397 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
16 Hb_004724_180 0.1585249721 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
17 Hb_001227_140 0.1590308475 - - PREDICTED: protein ROS1 [Jatropha curcas]
18 Hb_001497_040 0.1622281806 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
19 Hb_171168_010 0.1652276118 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_000049_170 0.1688769151 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002276_030 Hb_002276_030 Hb_008878_020 Hb_008878_020 Hb_002276_030--Hb_008878_020 Hb_001244_050 Hb_001244_050 Hb_002276_030--Hb_001244_050 Hb_006277_080 Hb_006277_080 Hb_002276_030--Hb_006277_080 Hb_000608_360 Hb_000608_360 Hb_002276_030--Hb_000608_360 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_001172_150 Hb_001172_150 Hb_002276_030--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_008878_020--Hb_000212_270 Hb_002030_090 Hb_002030_090 Hb_008878_020--Hb_002030_090 Hb_000697_020 Hb_000697_020 Hb_008878_020--Hb_000697_020 Hb_008878_020--Hb_001172_150 Hb_001266_130 Hb_001266_130 Hb_008878_020--Hb_001266_130 Hb_006478_050 Hb_006478_050 Hb_008878_020--Hb_006478_050 Hb_001244_050--Hb_008878_020 Hb_000917_200 Hb_000917_200 Hb_001244_050--Hb_000917_200 Hb_016687_010 Hb_016687_010 Hb_001244_050--Hb_016687_010 Hb_002675_230 Hb_002675_230 Hb_001244_050--Hb_002675_230 Hb_001244_050--Hb_000212_270 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_004724_180 Hb_004724_180 Hb_000608_360--Hb_004724_180 Hb_000608_360--Hb_003141_060 Hb_000640_330 Hb_000640_330 Hb_000608_360--Hb_000640_330 Hb_000608_360--Hb_006277_080 Hb_001300_160 Hb_001300_160 Hb_000608_360--Hb_001300_160 Hb_001508_030--Hb_008878_020 Hb_000049_170 Hb_000049_170 Hb_001508_030--Hb_000049_170 Hb_171168_010 Hb_171168_010 Hb_001508_030--Hb_171168_010 Hb_001508_030--Hb_016687_010 Hb_000968_010 Hb_000968_010 Hb_001508_030--Hb_000968_010 Hb_000042_310 Hb_000042_310 Hb_001508_030--Hb_000042_310 Hb_001172_150--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_001172_150--Hb_003119_130 Hb_001172_150--Hb_000212_270 Hb_061126_010 Hb_061126_010 Hb_001172_150--Hb_061126_010 Hb_000705_010 Hb_000705_010 Hb_001172_150--Hb_000705_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0876114 0.492357 1.19846 0.187562 0.0125732 0.0277606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0142422 0.0224152 0 0.386697 1.72224

CAGE analysis