Hb_000853_050

Information

Type -
Description -
Location Contig853: 47922-58062
Sequence    

Annotation

kegg
ID rcu:RCOM_1179440
description guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative (EC:2.7.6.5)
nr
ID XP_012082817.1
description PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID P0DKG8
description Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana GN=RSH1 PE=1 SV=1
trembl
ID A0A067K7G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13966 PE=4 SV=1
Gene Ontology
ID GO:0009507
description gtp diphosphokinase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60459: 47975-48825 , PASA_asmbl_60460: 51858-55300 , PASA_asmbl_60461: 56526-56695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_050 0.0 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_006277_080 0.1040697503 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
3 Hb_010632_010 0.125527147 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
4 Hb_007765_130 0.1273306212 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
5 Hb_003141_060 0.1293991129 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
6 Hb_001227_140 0.1359687597 - - PREDICTED: protein ROS1 [Jatropha curcas]
7 Hb_025045_010 0.1362864321 - - catalytic, putative [Ricinus communis]
8 Hb_000005_100 0.1372535358 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_000917_200 0.1377362914 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
10 Hb_000917_210 0.1402790834 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000608_360 0.1412951321 - - calreticulin, putative [Ricinus communis]
12 Hb_000891_010 0.1428676185 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000594_130 0.1456959905 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000926_070 0.1467354489 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000002_300 0.1507573355 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
16 Hb_000093_140 0.1538576741 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
17 Hb_002276_030 0.1541575905 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
18 Hb_002615_080 0.1543958612 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
19 Hb_000103_230 0.154505513 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
20 Hb_005276_070 0.1555545899 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000853_050 Hb_000853_050 Hb_006277_080 Hb_006277_080 Hb_000853_050--Hb_006277_080 Hb_010632_010 Hb_010632_010 Hb_000853_050--Hb_010632_010 Hb_007765_130 Hb_007765_130 Hb_000853_050--Hb_007765_130 Hb_003141_060 Hb_003141_060 Hb_000853_050--Hb_003141_060 Hb_001227_140 Hb_001227_140 Hb_000853_050--Hb_001227_140 Hb_025045_010 Hb_025045_010 Hb_000853_050--Hb_025045_010 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_006277_080--Hb_003141_060 Hb_000963_090 Hb_000963_090 Hb_010632_010--Hb_000963_090 Hb_001365_020 Hb_001365_020 Hb_010632_010--Hb_001365_020 Hb_000163_110 Hb_000163_110 Hb_010632_010--Hb_000163_110 Hb_001425_010 Hb_001425_010 Hb_010632_010--Hb_001425_010 Hb_010632_020 Hb_010632_020 Hb_010632_010--Hb_010632_020 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120 Hb_001227_140--Hb_003915_020 Hb_001227_140--Hb_000948_120 Hb_000940_030 Hb_000940_030 Hb_001227_140--Hb_000940_030 Hb_001227_140--Hb_001365_030 Hb_001227_140--Hb_003055_070 Hb_001821_060 Hb_001821_060 Hb_025045_010--Hb_001821_060 Hb_013968_010 Hb_013968_010 Hb_025045_010--Hb_013968_010 Hb_002026_030 Hb_002026_030 Hb_025045_010--Hb_002026_030 Hb_003912_080 Hb_003912_080 Hb_025045_010--Hb_003912_080 Hb_025045_010--Hb_007765_130 Hb_002888_040 Hb_002888_040 Hb_025045_010--Hb_002888_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.94696 4.6344 8.63636 4.51515 0.378379 0.68808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386419 0.445999 0.31079 4.03394 14.9514

CAGE analysis